/usr/share/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/data/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/data/knownGene.hg18.chr21.bed
|
text/plain
|
root:root
|
0o644
|
119.3 KB
|
/usr/share/bedtools/data/simpleRepeats.chr1.bed.gz
|
application/gzip
|
root:root
|
0o644
|
600.4 KB
|
/usr/share/bedtools/data/aluY.chr1.bed.gz
|
application/gzip
|
root:root
|
0o644
|
126.7 KB
|
/usr/share/bedtools/data/gerp.chr1.bed.gz
|
application/gzip
|
root:root
|
0o644
|
1.1 MB
|
/usr/share/bedtools/data/refseq.chr1.exons.bed.gz
|
application/gzip
|
root:root
|
0o644
|
445.6 KB
|
/usr/share/bedtools/data/knownGene.hg18.chr21.short.bed
|
text/plain
|
root:root
|
0o644
|
19.4 KB
|
/usr/share/bedtools/test/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/fisher/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/fisher/a_merge.bed
|
text/plain
|
root:root
|
0o644
|
44 bytes
|
/usr/share/bedtools/test/fisher/b.bed
|
text/plain
|
root:root
|
0o644
|
22 bytes
|
/usr/share/bedtools/test/fisher/plot.py
|
text/plain
|
root:root
|
0o644
|
1.1 KB
|
/usr/share/bedtools/test/fisher/shuf.sh
|
text/x-shellscript
|
root:root
|
0o755
|
958 bytes
|
/usr/share/bedtools/test/fisher/sim.py
|
text/x-python
|
root:root
|
0o644
|
978 bytes
|
/usr/share/bedtools/test/fisher/t.500.genome
|
text/plain
|
root:root
|
0o644
|
9 bytes
|
/usr/share/bedtools/test/fisher/test-fisher.sh
|
text/x-shellscript
|
root:root
|
0o755
|
2.5 KB
|
/usr/share/bedtools/test/fisher/README.md
|
text/plain
|
root:root
|
0o644
|
789 bytes
|
/usr/share/bedtools/test/fisher/t.60.genome
|
text/plain
|
root:root
|
0o644
|
8 bytes
|
/usr/share/bedtools/test/fisher/a.bed
|
text/plain
|
root:root
|
0o644
|
33 bytes
|
/usr/share/bedtools/test/fisher/cmp.sh
|
text/x-shellscript
|
root:root
|
0o755
|
191 bytes
|
/usr/share/bedtools/test/coverage/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/coverage/sam-w-del.sam
|
text/plain
|
root:root
|
0o644
|
142 bytes
|
/usr/share/bedtools/test/coverage/test-coverage.sh
|
text/x-shellscript
|
root:root
|
0o755
|
13.4 KB
|
/usr/share/bedtools/test/coverage/b.bed
|
text/plain
|
root:root
|
0o644
|
396 bytes
|
/usr/share/bedtools/test/coverage/one_block.bam.bai
|
application/octet-stream
|
root:root
|
0o644
|
96 bytes
|
/usr/share/bedtools/test/coverage/sam-w-del.bam.bai
|
application/octet-stream
|
root:root
|
0o644
|
96 bytes
|
/usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed
|
text/plain
|
root:root
|
0o644
|
63 bytes
|
/usr/share/bedtools/test/coverage/three_blocks.sam
|
text/plain
|
root:root
|
0o644
|
171 bytes
|
/usr/share/bedtools/test/coverage/three_blocks_match.bed
|
text/plain
|
root:root
|
0o644
|
60 bytes
|
/usr/share/bedtools/test/coverage/one_block.sam
|
text/plain
|
root:root
|
0o644
|
156 bytes
|
/usr/share/bedtools/test/coverage/a.bed
|
text/plain
|
root:root
|
0o644
|
116 bytes
|
/usr/share/bedtools/test/coverage/three_blocks_nomatch.bed
|
text/plain
|
root:root
|
0o644
|
63 bytes
|
/usr/share/bedtools/test/coverage/two_blocks.bam.bai
|
application/octet-stream
|
root:root
|
0o644
|
96 bytes
|
/usr/share/bedtools/test/closest/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/coverage/two_blocks.sam
|
text/plain
|
root:root
|
0o644
|
162 bytes
|
/usr/share/bedtools/test/coverage/three_blocks.bam.bai
|
application/octet-stream
|
root:root
|
0o644
|
96 bytes
|
/usr/share/bedtools/test/sort/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/sort/test-sort.sh
|
text/x-shellscript
|
root:root
|
0o755
|
3.9 KB
|
/usr/share/bedtools/test/sort/names.txt
|
text/plain
|
root:root
|
0o644
|
15 bytes
|
/usr/share/bedtools/test/sort/a.bed
|
text/plain
|
root:root
|
0o644
|
206 bytes
|
/usr/share/bedtools/test/expand/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/expand/expand.txt
|
text/plain
|
root:root
|
0o644
|
52 bytes
|
/usr/share/bedtools/test/expand/test-expand.sh
|
text/x-shellscript
|
root:root
|
0o755
|
1.3 KB
|
/usr/share/bedtools/test/slop/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/slop/test-slop.sh
|
text/x-shellscript
|
root:root
|
0o755
|
4.8 KB
|
/usr/share/bedtools/test/slop/tiny.genome
|
text/plain
|
root:root
|
0o644
|
10 bytes
|
/usr/share/bedtools/test/slop/a.bed
|
text/plain
|
root:root
|
0o644
|
41 bytes
|
/usr/share/bedtools/test/genomecov/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/genomecov/sam-w-del.sam
|
text/plain
|
root:root
|
0o644
|
142 bytes
|
/usr/share/bedtools/test/genomecov/test-genomecov.sh
|
text/x-shellscript
|
root:root
|
0o755
|
5.5 KB
|
/usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed
|
text/plain
|
root:root
|
0o644
|
63 bytes
|
/usr/share/bedtools/test/genomecov/three_blocks.sam
|
text/plain
|
root:root
|
0o644
|
171 bytes
|
/usr/share/bedtools/test/genomecov/y.bed
|
text/plain
|
root:root
|
0o644
|
30 bytes
|
/usr/share/bedtools/test/genomecov/three_blocks_match.bed
|
text/plain
|
root:root
|
0o644
|
60 bytes
|
/usr/share/bedtools/test/getfasta/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/genomecov/one_block.sam
|
text/plain
|
root:root
|
0o644
|
156 bytes
|
/usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed
|
text/plain
|
root:root
|
0o644
|
63 bytes
|
/usr/share/bedtools/test/genomecov/two_blocks.sam
|
text/plain
|
root:root
|
0o644
|
162 bytes
|
/usr/share/bedtools/test/cluster/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/cluster/in.bed
|
text/plain
|
root:root
|
0o644
|
264 bytes
|
/usr/share/bedtools/test/cluster/test-cluster.sh
|
text/x-shellscript
|
root:root
|
0o755
|
1.4 KB
|
/usr/share/bedtools/test/split/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/split/test-split.sh
|
text/x-shellscript
|
root:root
|
0o755
|
1.6 KB
|
/usr/share/bedtools/test/split/exp
|
text/plain
|
root:root
|
0o644
|
250 bytes
|
/usr/share/bedtools/test/flank/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/flank/tiny.genome
|
text/plain
|
root:root
|
0o644
|
10 bytes
|
/usr/share/bedtools/test/flank/a.bed
|
text/plain
|
root:root
|
0o644
|
41 bytes
|
/usr/share/bedtools/test/flank/test-flank.sh
|
text/x-shellscript
|
root:root
|
0o755
|
3.8 KB
|
/usr/share/bedtools/test/test.sh
|
text/x-shellscript
|
root:root
|
0o755
|
1.8 KB
|
/usr/share/bedtools/test/spacing/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/spacing/a.bed
|
text/plain
|
root:root
|
0o644
|
97 bytes
|
/usr/share/bedtools/test/spacing/test-spacing.sh
|
text/x-shellscript
|
root:root
|
0o755
|
466 bytes
|
/usr/share/bedtools/test/merge/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/merge/bug254_e.bed
|
text/plain
|
root:root
|
0o644
|
99 bytes
|
/usr/share/bedtools/test/merge/precisionTest2.bed
|
text/plain
|
root:root
|
0o644
|
235 bytes
|
/usr/share/bedtools/test/merge/bamCol9Mean.txt
|
text/plain
|
root:root
|
0o644
|
2.4 KB
|
/usr/share/bedtools/test/merge/bamCol3Collapse.txt
|
text/plain
|
root:root
|
0o644
|
2.9 KB
|
/usr/share/bedtools/test/merge/b.bed
|
text/plain
|
root:root
|
0o644
|
80 bytes
|
/usr/share/bedtools/test/merge/vcfSVtest.vcf
|
text/plain
|
root:root
|
0o644
|
884 bytes
|
/usr/share/bedtools/test/merge/testA.vcf
|
text/plain
|
root:root
|
0o644
|
17.0 KB
|
/usr/share/bedtools/test/merge/bamCol5Mean.txt
|
text/plain
|
root:root
|
0o644
|
2.2 KB
|
/usr/share/bedtools/test/merge/bamCol7Collapse.txt
|
text/plain
|
root:root
|
0o644
|
2.9 KB
|
/usr/share/bedtools/test/merge/bug254_c.bed
|
text/plain
|
root:root
|
0o644
|
91 bytes
|
/usr/share/bedtools/test/merge/unsorted.bed
|
text/plain
|
root:root
|
0o644
|
80 bytes
|
/usr/share/bedtools/test/merge/mergeBugTest.bed
|
text/plain
|
root:root
|
0o644
|
384 bytes
|
/usr/share/bedtools/test/merge/bamCol6Collapse.txt
|
text/plain
|
root:root
|
0o644
|
2.9 KB
|
/usr/share/bedtools/test/merge/fullFields.bam
|
application/gzip
|
root:root
|
0o644
|
25.2 KB
|
/usr/share/bedtools/test/merge/test-merge.sh
|
text/x-shellscript
|
root:root
|
0o755
|
17.4 KB
|
/usr/share/bedtools/test/closest/sortAndNaming/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/merge/precisionTest.bed
|
text/plain
|
root:root
|
0o644
|
210 bytes
|
/usr/share/bedtools/test/merge/expFormat.bed
|
text/plain
|
root:root
|
0o644
|
14 bytes
|
/usr/share/bedtools/test/merge/a.bed
|
text/plain
|
root:root
|
0o644
|
46 bytes
|
/usr/share/bedtools/test/merge/a.names.bed
|
text/plain
|
root:root
|
0o644
|
57 bytes
|
/usr/share/bedtools/test/merge/a.full.bed
|
text/plain
|
root:root
|
0o644
|
147 bytes
|
/usr/share/bedtools/test/merge/bamCol11Collapse.txt
|
text/plain
|
root:root
|
0o644
|
21.9 KB
|
/usr/share/bedtools/test/merge/bamCol8Mean.txt
|
text/plain
|
root:root
|
0o644
|
2.6 KB
|
/usr/share/bedtools/test/merge/bug254_d.bed
|
text/plain
|
root:root
|
0o644
|
99 bytes
|
/usr/share/bedtools/test/merge/bamCol10Collapse.txt
|
text/plain
|
root:root
|
0o644
|
21.9 KB
|
/usr/share/bedtools/test/merge/a.full.bam
|
application/gzip
|
root:root
|
0o644
|
1.8 KB
|
/usr/share/bedtools/test/merge/mixedStrands.bed
|
text/plain
|
root:root
|
0o644
|
233 bytes
|
/usr/share/bedtools/test/merge/a.gff
|
text/plain
|
root:root
|
0o644
|
297 bytes
|
/usr/share/bedtools/test/merge/bamCol1Collapse.txt
|
text/plain
|
root:root
|
0o644
|
8.5 KB
|
/usr/share/bedtools/test/merge/bamCol4Mean.txt
|
text/plain
|
root:root
|
0o644
|
2.6 KB
|
/usr/share/bedtools/test/general/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/general/empty.bed
|
application/x-empty
|
root:root
|
0o644
|
0 bytes
|
/usr/share/bedtools/test/general/non-empty.bed.gz
|
application/gzip
|
root:root
|
0o644
|
53 bytes
|
/usr/share/bedtools/test/general/test-general.sh
|
text/x-shellscript
|
root:root
|
0o755
|
6.5 KB
|
/usr/share/bedtools/test/shuffle/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/closest/strand-test-b.bed
|
text/plain
|
root:root
|
0o644
|
20 bytes
|
/usr/share/bedtools/test/closest/b-one-bp-closer.bed
|
text/plain
|
root:root
|
0o644
|
11 bytes
|
/usr/share/bedtools/test/closest/d4.bed
|
text/plain
|
root:root
|
0o644
|
24 bytes
|
/usr/share/bedtools/test/closest/close-b.bed
|
text/plain
|
root:root
|
0o644
|
87 bytes
|
/usr/share/bedtools/test/closest/a2.bed
|
text/plain
|
root:root
|
0o644
|
18 bytes
|
/usr/share/bedtools/test/closest/d.bed
|
text/plain
|
root:root
|
0o644
|
13 bytes
|
/usr/share/bedtools/test/closest/b.bed
|
text/plain
|
root:root
|
0o644
|
11 bytes
|
/usr/share/bedtools/test/closest/bug157_b.bed
|
text/plain
|
root:root
|
0o644
|
34 bytes
|
/usr/share/bedtools/test/closest/mdb1.bed
|
text/plain
|
root:root
|
0o644
|
62 bytes
|
/usr/share/bedtools/test/closest/b.names.bed
|
text/plain
|
root:root
|
0o644
|
36 bytes
|
/usr/share/bedtools/test/closest/close-a.bed
|
text/plain
|
root:root
|
0o644
|
144 bytes
|
/usr/share/bedtools/test/closest/mdb3.bed
|
text/plain
|
root:root
|
0o644
|
21 bytes
|
/usr/share/bedtools/test/closest/mdb2.bed
|
text/plain
|
root:root
|
0o644
|
65 bytes
|
/usr/share/bedtools/test/closest/d_d1F.bed
|
text/plain
|
root:root
|
0o644
|
22 bytes
|
/usr/share/bedtools/test/closest/d_id.bed
|
text/plain
|
root:root
|
0o644
|
23 bytes
|
/usr/share/bedtools/test/closest/strand-test-d.bed
|
text/plain
|
root:root
|
0o644
|
38 bytes
|
/usr/share/bedtools/test/closest/d_d2R.bed
|
text/plain
|
root:root
|
0o644
|
24 bytes
|
/usr/share/bedtools/test/closest/sortAndNaming/db1_num.bed
|
text/plain
|
root:root
|
0o644
|
72 bytes
|
/usr/share/bedtools/test/closest/sortAndNaming/alpha_all.bed
|
text/plain
|
root:root
|
0o644
|
58 bytes
|
/usr/share/bedtools/test/closest/sortAndNaming/q1_num.bed
|
text/plain
|
root:root
|
0o644
|
120 bytes
|
/usr/share/bedtools/test/closest/sortAndNaming/db1_noChr.bed
|
text/plain
|
root:root
|
0o644
|
114 bytes
|
/usr/share/bedtools/test/closest/sortAndNaming/q1a_num.bed
|
text/plain
|
root:root
|
0o644
|
130 bytes
|
/usr/share/bedtools/test/closest/sortAndNaming/alpha_missing.bed
|
text/plain
|
root:root
|
0o644
|
34 bytes
|
/usr/share/bedtools/test/closest/sortAndNaming/num_all.bed
|
text/plain
|
root:root
|
0o644
|
58 bytes
|
/usr/share/bedtools/test/closest/sortAndNaming/sq1.bed
|
text/plain
|
root:root
|
0o644
|
23 bytes
|
/usr/share/bedtools/test/closest/sortAndNaming/db3_numBackwards.bed
|
text/plain
|
root:root
|
0o644
|
47 bytes
|
/usr/share/bedtools/test/closest/sortAndNaming/db1_leadingZero.txt
|
text/plain
|
root:root
|
0o644
|
130 bytes
|
/usr/share/bedtools/test/closest/sortAndNaming/db2_numBackwards.bed
|
text/plain
|
root:root
|
0o644
|
71 bytes
|
/usr/share/bedtools/test/closest/sortAndNaming/db1_gls.bed
|
text/plain
|
root:root
|
0o644
|
139 bytes
|
/usr/share/bedtools/test/closest/sortAndNaming/test-sort-and-naming.sh
|
text/x-shellscript
|
root:root
|
0o755
|
10.5 KB
|
/usr/share/bedtools/test/closest/sortAndNaming/sdb1.bed
|
text/plain
|
root:root
|
0o644
|
23 bytes
|
/usr/share/bedtools/test/closest/sortAndNaming/db2_num.bed
|
text/plain
|
root:root
|
0o644
|
71 bytes
|
/usr/share/bedtools/test/closest/sortAndNaming/q1_gls.bed
|
text/plain
|
root:root
|
0o644
|
139 bytes
|
/usr/share/bedtools/test/closest/sortAndNaming/num_missing.bed
|
text/plain
|
root:root
|
0o644
|
34 bytes
|
/usr/share/bedtools/test/closest/strand-test-c.bed
|
text/plain
|
root:root
|
0o644
|
41 bytes
|
/usr/share/bedtools/test/closest/d_d2F.bed
|
text/plain
|
root:root
|
0o644
|
24 bytes
|
/usr/share/bedtools/test/closest/strand-test-a.bed
|
text/plain
|
root:root
|
0o644
|
21 bytes
|
/usr/share/bedtools/test/closest/mq1.bed
|
text/plain
|
root:root
|
0o644
|
19 bytes
|
/usr/share/bedtools/test/closest/a.bed
|
text/plain
|
root:root
|
0o644
|
34 bytes
|
/usr/share/bedtools/test/closest/a.names.bed
|
text/plain
|
root:root
|
0o644
|
35 bytes
|
/usr/share/bedtools/test/closest/d_q1.bed
|
text/plain
|
root:root
|
0o644
|
23 bytes
|
/usr/share/bedtools/test/closest/d_iu.bed
|
text/plain
|
root:root
|
0o644
|
24 bytes
|
/usr/share/bedtools/test/closest/test-closest.sh
|
text/x-shellscript
|
root:root
|
0o755
|
20.0 KB
|
/usr/share/bedtools/test/closest/d_d1R.bed
|
text/plain
|
root:root
|
0o644
|
22 bytes
|
/usr/share/bedtools/test/closest/bug157_a.bed
|
text/plain
|
root:root
|
0o644
|
18 bytes
|
/usr/share/bedtools/test/closest/b2.bed
|
text/plain
|
root:root
|
0o644
|
34 bytes
|
/usr/share/bedtools/test/closest/d_q2.bed
|
text/plain
|
root:root
|
0o644
|
23 bytes
|
/usr/share/bedtools/test/closest/kclosest/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/closest/kclosest/q2.bed
|
text/plain
|
root:root
|
0o644
|
46 bytes
|
/usr/share/bedtools/test/closest/kclosest/d2.bed
|
text/plain
|
root:root
|
0o644
|
196 bytes
|
/usr/share/bedtools/test/closest/kclosest/q1.bed
|
text/plain
|
root:root
|
0o644
|
13 bytes
|
/usr/share/bedtools/test/closest/kclosest/d3.bed
|
text/plain
|
root:root
|
0o644
|
390 bytes
|
/usr/share/bedtools/test/closest/kclosest/d1.bed
|
text/plain
|
root:root
|
0o644
|
77 bytes
|
/usr/share/bedtools/test/closest/kclosest/test-kclosest.sh
|
text/x-shellscript
|
root:root
|
0o755
|
21.8 KB
|
/usr/share/bedtools/test/bed12tobed6/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
|
text/x-shellscript
|
root:root
|
0o755
|
1.9 KB
|
/usr/share/bedtools/test/bed12tobed6/three_blocks.bed
|
text/plain
|
root:root
|
0o644
|
60 bytes
|
/usr/share/bedtools/test/bed12tobed6/one_blocks.bed
|
text/plain
|
root:root
|
0o644
|
46 bytes
|
/usr/share/bedtools/test/bed12tobed6/bed6.bed
|
text/plain
|
root:root
|
0o644
|
18 bytes
|
/usr/share/bedtools/test/bed12tobed6/two_blocks.bed
|
text/plain
|
root:root
|
0o644
|
52 bytes
|
/usr/share/bedtools/test/jaccard/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/jaccard/e.bed
|
text/plain
|
root:root
|
0o644
|
10 bytes
|
/usr/share/bedtools/test/jaccard/b.bed
|
text/plain
|
root:root
|
0o644
|
77 bytes
|
/usr/share/bedtools/test/jaccard/a.bam
|
application/gzip
|
root:root
|
0o644
|
1.8 KB
|
/usr/share/bedtools/test/jaccard/three_blocks_match.bam
|
application/gzip
|
root:root
|
0o644
|
1.8 KB
|
/usr/share/bedtools/test/jaccard/c.bed
|
text/plain
|
root:root
|
0o644
|
18 bytes
|
/usr/share/bedtools/test/jaccard/test-jaccard.sh
|
text/x-shellscript
|
root:root
|
0o755
|
4.0 KB
|
/usr/share/bedtools/test/jaccard/three_blocks_match.bed
|
text/plain
|
root:root
|
0o644
|
60 bytes
|
/usr/share/bedtools/test/jaccard/bMixedStrands.bed
|
text/plain
|
root:root
|
0o644
|
105 bytes
|
/usr/share/bedtools/test/jaccard/aMixedStrands.bed
|
text/plain
|
root:root
|
0o644
|
233 bytes
|
/usr/share/bedtools/test/jaccard/a.bed
|
text/plain
|
root:root
|
0o644
|
61 bytes
|
/usr/share/bedtools/test/subtract/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/subtract/test-subtract.sh
|
text/x-shellscript
|
root:root
|
0o755
|
6.6 KB
|
/usr/share/bedtools/test/subtract/d.bed
|
text/plain
|
root:root
|
0o644
|
27 bytes
|
/usr/share/bedtools/test/subtract/b.bed
|
text/plain
|
root:root
|
0o644
|
36 bytes
|
/usr/share/bedtools/test/subtract/c.bed
|
text/plain
|
root:root
|
0o644
|
10 bytes
|
/usr/share/bedtools/test/subtract/a.bed
|
text/plain
|
root:root
|
0o644
|
36 bytes
|
/usr/share/bedtools/test/subtract/b2.bed
|
text/plain
|
root:root
|
0o644
|
21 bytes
|
/usr/share/bedtools/test/multicov/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/multicov/test-multicov.sh
|
text/x-shellscript
|
root:root
|
0o755
|
3.8 KB
|
/usr/share/bedtools/test/multicov/one_block.bam.bai
|
application/octet-stream
|
root:root
|
0o644
|
96 bytes
|
/usr/share/bedtools/test/multicov/one_block.sam
|
text/plain
|
root:root
|
0o644
|
162 bytes
|
/usr/share/bedtools/test/multicov/two_blocks.bam.bai
|
application/octet-stream
|
root:root
|
0o644
|
96 bytes
|
/usr/share/bedtools/test/multicov/multicov.bed
|
text/plain
|
root:root
|
0o644
|
72 bytes
|
/usr/share/bedtools/test/multicov/two_blocks.sam
|
text/plain
|
root:root
|
0o644
|
167 bytes
|
/usr/share/bedtools/test/getfasta/t_fH.fa.fai
|
text/plain
|
root:root
|
0o644
|
43 bytes
|
/usr/share/bedtools/test/getfasta/t.bed
|
application/x-empty
|
root:root
|
0o644
|
0 bytes
|
/usr/share/bedtools/test/getfasta/t.fa.fai
|
text/plain
|
root:root
|
0o644
|
16 bytes
|
/usr/share/bedtools/test/getfasta/test.iupac.bed
|
text/plain
|
root:root
|
0o644
|
32 bytes
|
/usr/share/bedtools/test/getfasta/blocks.bed
|
text/plain
|
root:root
|
0o644
|
117 bytes
|
/usr/share/bedtools/test/getfasta/t_fH.fa
|
text/plain
|
root:root
|
0o644
|
87 bytes
|
/usr/share/bedtools/test/getfasta/t.fa
|
text/plain
|
root:root
|
0o644
|
61 bytes
|
/usr/share/bedtools/test/getfasta/test-getfasta.sh
|
text/x-shellscript
|
root:root
|
0o755
|
2.6 KB
|
/usr/share/bedtools/test/getfasta/test.iupac.fa
|
text/plain
|
root:root
|
0o644
|
48 bytes
|
/usr/share/bedtools/test/bamtofastq/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/bamtofastq/test-bamtofastq.sh
|
text/x-shellscript
|
root:root
|
0o755
|
313 bytes
|
/usr/share/bedtools/test/bamtofastq/test.sam
|
text/plain
|
root:root
|
0o644
|
566 bytes
|
/usr/share/bedtools/test/bamtofastq/golden.fq2
|
text/plain
|
root:root
|
0o644
|
152 bytes
|
/usr/share/bedtools/test/bamtofastq/golden.fq
|
text/plain
|
root:root
|
0o644
|
152 bytes
|
/usr/share/bedtools/test/reldist/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/reldist/test-reldist.sh
|
text/x-shellscript
|
root:root
|
0o755
|
3.5 KB
|
/usr/share/bedtools/test/shuffle/excl.bed
|
text/plain
|
root:root
|
0o644
|
178 bytes
|
/usr/share/bedtools/test/shuffle/simrep.bed
|
text/plain
|
root:root
|
0o644
|
27.0 KB
|
/usr/share/bedtools/test/shuffle/test-shuffle.sh
|
text/x-shellscript
|
root:root
|
0o755
|
3.6 KB
|
/usr/share/bedtools/test/shuffle/incl.bed
|
text/plain
|
root:root
|
0o644
|
159 bytes
|
/usr/share/bedtools/test/map/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/map/bug262_b.bed
|
text/plain
|
root:root
|
0o644
|
60 bytes
|
/usr/share/bedtools/test/map/d.bed
|
text/plain
|
root:root
|
0o644
|
34 bytes
|
/usr/share/bedtools/test/map/ivls.bed
|
text/plain
|
root:root
|
0o644
|
80 bytes
|
/usr/share/bedtools/test/map/ivls2.bed
|
text/plain
|
root:root
|
0o644
|
55 bytes
|
/usr/share/bedtools/test/map/a.vsorted.bed
|
text/plain
|
root:root
|
0o644
|
58 bytes
|
/usr/share/bedtools/test/map/bug262_a.bed
|
text/plain
|
root:root
|
0o644
|
48 bytes
|
/usr/share/bedtools/test/map/t.bed
|
text/plain
|
root:root
|
0o644
|
11 bytes
|
/usr/share/bedtools/test/map/values3.bed
|
text/plain
|
root:root
|
0o644
|
227 bytes
|
/usr/share/bedtools/test/map/values5.bed
|
text/plain
|
root:root
|
0o644
|
147 bytes
|
/usr/share/bedtools/test/map/three_blocks_match.bed
|
text/plain
|
root:root
|
0o644
|
61 bytes
|
/usr/share/bedtools/test/map/fullFields.bam
|
application/gzip
|
root:root
|
0o644
|
25.2 KB
|
/usr/share/bedtools/test/map/values.bed
|
text/plain
|
root:root
|
0o644
|
148 bytes
|
/usr/share/bedtools/test/map/values4.bed
|
text/plain
|
root:root
|
0o644
|
256 bytes
|
/usr/share/bedtools/test/map/test.vcf
|
text/plain
|
root:root
|
0o644
|
1.8 KB
|
/usr/share/bedtools/test/map/genome
|
text/plain
|
root:root
|
0o644
|
30 bytes
|
/usr/share/bedtools/test/map/three_blocks_nomatch.bed
|
text/plain
|
root:root
|
0o644
|
64 bytes
|
/usr/share/bedtools/test/map/values.bam
|
application/gzip
|
root:root
|
0o644
|
1.8 KB
|
/usr/share/bedtools/test/map/test.gff
|
text/plain
|
root:root
|
0o644
|
483 bytes
|
/usr/share/bedtools/test/map/values2.bed
|
text/plain
|
root:root
|
0o644
|
186 bytes
|
/usr/share/bedtools/test/map/test-map.sh
|
text/x-shellscript
|
root:root
|
0o755
|
21.4 KB
|
/usr/share/bedtools/test/map/b.vsorted.bed
|
text/plain
|
root:root
|
0o644
|
33 bytes
|
/usr/share/bedtools/test/intersect/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/intersect/two_blocks_partial.bam.bai
|
application/octet-stream
|
root:root
|
0o644
|
832 bytes
|
/usr/share/bedtools/test/intersect/bed6.strand2.bed
|
text/plain
|
root:root
|
0o644
|
48 bytes
|
/usr/share/bedtools/test/intersect/bug223_d.vcf
|
text/plain
|
root:root
|
0o644
|
411 bytes
|
/usr/share/bedtools/test/intersect/queryUnmappedMateMappedCoordsInvalid.bam
|
application/gzip
|
root:root
|
0o644
|
1.0 KB
|
/usr/share/bedtools/test/intersect/chromOrderA.bed
|
text/plain
|
root:root
|
0o644
|
122 bytes
|
/usr/share/bedtools/test/intersect/bug44_b.bed
|
text/plain
|
root:root
|
0o644
|
478 bytes
|
/usr/share/bedtools/test/intersect/splitBug155_a.bed
|
text/plain
|
root:root
|
0o644
|
38 bytes
|
/usr/share/bedtools/test/intersect/dummy.txt
|
text/plain
|
root:root
|
0o644
|
15 bytes
|
/usr/share/bedtools/test/intersect/dosLineCharWithExtraTab_b.bed
|
text/plain
|
root:root
|
0o644
|
62 bytes
|
/usr/share/bedtools/test/bamtobed/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/intersect/e.bed
|
text/plain
|
root:root
|
0o644
|
12 bytes
|
/usr/share/bedtools/test/intersect/new_test-intersect.sh
|
text/x-shellscript
|
root:root
|
0o755
|
31.1 KB
|
/usr/share/bedtools/test/intersect/bug223_e.vcf
|
text/plain
|
root:root
|
0o644
|
412 bytes
|
/usr/share/bedtools/test/intersect/d.bed
|
text/plain
|
root:root
|
0o644
|
10 bytes
|
/usr/share/bedtools/test/intersect/aVSb.bam
|
application/gzip
|
root:root
|
0o644
|
1.7 KB
|
/usr/share/bedtools/test/intersect/b.bed
|
text/plain
|
root:root
|
0o644
|
77 bytes
|
/usr/share/bedtools/test/intersect/splitBug155_b.bed
|
text/plain
|
root:root
|
0o644
|
38 bytes
|
/usr/share/bedtools/test/intersect/bug187_b.bed
|
text/plain
|
root:root
|
0o644
|
71 bytes
|
/usr/share/bedtools/test/intersect/a_withLargeHeader_bgzipped.bed.gz
|
application/gzip
|
root:root
|
0o644
|
10.4 KB
|
/usr/share/bedtools/test/intersect/gdc_exp
|
text/plain
|
root:root
|
0o644
|
544 bytes
|
/usr/share/bedtools/test/intersect/performanceTest.sh
|
text/x-shellscript
|
root:root
|
0o755
|
8.7 KB
|
/usr/share/bedtools/test/intersect/multi_intersect/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/intersect/multi_intersect/g.bed
|
text/plain
|
root:root
|
0o644
|
28 bytes
|
/usr/share/bedtools/test/intersect/multi_intersect/d4.bed
|
text/plain
|
root:root
|
0o644
|
102 bytes
|
/usr/share/bedtools/test/intersect/multi_intersect/d5.bed
|
text/plain
|
root:root
|
0o644
|
74 bytes
|
/usr/share/bedtools/test/intersect/multi_intersect/d2.bed
|
text/plain
|
root:root
|
0o644
|
72 bytes
|
/usr/share/bedtools/test/intersect/multi_intersect/query.bed
|
text/plain
|
root:root
|
0o644
|
135 bytes
|
/usr/share/bedtools/test/intersect/multi_intersect/d9.bed
|
text/plain
|
root:root
|
0o644
|
90 bytes
|
/usr/share/bedtools/test/intersect/multi_intersect/query3.bed
|
text/plain
|
root:root
|
0o644
|
269 bytes
|
/usr/share/bedtools/test/intersect/multi_intersect/query2.bed
|
text/plain
|
root:root
|
0o644
|
162 bytes
|
/usr/share/bedtools/test/intersect/multi_intersect/d8.bed
|
text/plain
|
root:root
|
0o644
|
158 bytes
|
/usr/share/bedtools/test/intersect/multi_intersect/d6.bed
|
text/plain
|
root:root
|
0o644
|
37 bytes
|
/usr/share/bedtools/test/intersect/multi_intersect/d3.bed
|
text/plain
|
root:root
|
0o644
|
36 bytes
|
/usr/share/bedtools/test/intersect/multi_intersect/d1.bed
|
text/plain
|
root:root
|
0o644
|
99 bytes
|
/usr/share/bedtools/test/intersect/multi_intersect/d7.bed
|
text/plain
|
root:root
|
0o644
|
218 bytes
|
/usr/share/bedtools/test/intersect/multi_intersect/test-multi_intersect.sh
|
text/x-shellscript
|
root:root
|
0o755
|
11.7 KB
|
/usr/share/bedtools/test/intersect/recordsOutOfOrder.bed
|
text/plain
|
root:root
|
0o644
|
44 bytes
|
/usr/share/bedtools/test/intersect/headerOnly.vcf
|
text/plain
|
root:root
|
0o644
|
9.8 KB
|
/usr/share/bedtools/test/intersect/two_blocks_partial.bam
|
application/gzip
|
root:root
|
0o644
|
1.8 KB
|
/usr/share/bedtools/test/intersect/a.bam
|
application/gzip
|
root:root
|
0o644
|
1.7 KB
|
/usr/share/bedtools/test/intersect/a_withLargeHeader_gzipped.bed.gz
|
application/gzip
|
root:root
|
0o644
|
10.1 KB
|
/usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed
|
text/plain
|
root:root
|
0o644
|
63 bytes
|
/usr/share/bedtools/test/intersect/chromOrderB.bed
|
text/plain
|
root:root
|
0o644
|
244 bytes
|
/usr/share/bedtools/test/intersect/three_blocks_match.bam
|
application/gzip
|
root:root
|
0o644
|
1.8 KB
|
/usr/share/bedtools/test/intersect/bug167_strandSweep.bed
|
text/plain
|
root:root
|
0o644
|
306 bytes
|
/usr/share/bedtools/test/intersect/three_blocks.sam
|
text/plain
|
root:root
|
0o644
|
176 bytes
|
/usr/share/bedtools/test/intersect/a_withLargeHeader.bed
|
text/plain
|
root:root
|
0o644
|
198.2 KB
|
/usr/share/bedtools/test/intersect/b_vcfSVtest.vcf
|
text/plain
|
root:root
|
0o644
|
875 bytes
|
/usr/share/bedtools/test/intersect/sortAndNaming/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/intersect/sortAndNaming/db1_num.bed
|
text/plain
|
root:root
|
0o644
|
72 bytes
|
/usr/share/bedtools/test/intersect/sortAndNaming/alpha_all.bed
|
text/plain
|
root:root
|
0o644
|
58 bytes
|
/usr/share/bedtools/test/intersect/sortAndNaming/q1_num.bed
|
text/plain
|
root:root
|
0o644
|
120 bytes
|
/usr/share/bedtools/test/intersect/sortAndNaming/db1_noChr.bed
|
text/plain
|
root:root
|
0o644
|
114 bytes
|
/usr/share/bedtools/test/intersect/sortAndNaming/q1a_num.bed
|
text/plain
|
root:root
|
0o644
|
130 bytes
|
/usr/share/bedtools/test/intersect/sortAndNaming/alpha_missing.bed
|
text/plain
|
root:root
|
0o644
|
34 bytes
|
/usr/share/bedtools/test/intersect/sortAndNaming/num_all.bed
|
text/plain
|
root:root
|
0o644
|
58 bytes
|
/usr/share/bedtools/test/intersect/sortAndNaming/sq1.bed
|
text/plain
|
root:root
|
0o644
|
23 bytes
|
/usr/share/bedtools/test/intersect/sortAndNaming/db3_numBackwards.bed
|
text/plain
|
root:root
|
0o644
|
47 bytes
|
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/2.21_5v5.txt
|
text/plain
|
root:root
|
0o644
|
1.1 MB
|
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/qchr1.bed
|
text/plain
|
root:root
|
0o644
|
1.4 MB
|
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/db500K.bed
|
text/plain
|
root:root
|
0o644
|
17.5 MB
|
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/2.21_chr1.txt
|
text/plain
|
root:root
|
0o644
|
84.7 KB
|
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/2.21_500Kvs500K.txt
|
text/plain
|
root:root
|
0o644
|
567.3 KB
|
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/curr500Kvs500K.txt
|
text/plain
|
root:root
|
0o644
|
558.5 KB
|
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/currChr1.txt
|
text/plain
|
root:root
|
0o644
|
84.7 KB
|
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/dbchr1.bed
|
text/plain
|
root:root
|
0o644
|
1.4 MB
|
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/diffs.txt
|
text/plain
|
root:root
|
0o644
|
1.4 KB
|
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/q500K.bed
|
text/plain
|
root:root
|
0o644
|
17.5 MB
|
/usr/share/bedtools/test/intersect/sortAndNaming/bigTests/curr5v5.txt
|
text/plain
|
root:root
|
0o644
|
1.1 MB
|
/usr/share/bedtools/test/intersect/sortAndNaming/db1_leadingZero.txt
|
text/plain
|
root:root
|
0o644
|
130 bytes
|
/usr/share/bedtools/test/intersect/sortAndNaming/db2_numBackwards.bed
|
text/plain
|
root:root
|
0o644
|
71 bytes
|
/usr/share/bedtools/test/intersect/sortAndNaming/db1_gls.bed
|
text/plain
|
root:root
|
0o644
|
139 bytes
|
/usr/share/bedtools/test/intersect/sortAndNaming/exp1
|
text/plain
|
root:root
|
0o644
|
108 bytes
|
/usr/share/bedtools/test/intersect/sortAndNaming/test-sort-and-naming.sh
|
text/x-shellscript
|
root:root
|
0o755
|
10.3 KB
|
/usr/share/bedtools/test/intersect/sortAndNaming/diffs.txt
|
text/plain
|
root:root
|
0o644
|
11.9 KB
|
/usr/share/bedtools/test/intersect/sortAndNaming/sdb1.bed
|
text/plain
|
root:root
|
0o644
|
23 bytes
|
/usr/share/bedtools/test/intersect/sortAndNaming/db2_num.bed
|
text/plain
|
root:root
|
0o644
|
71 bytes
|
/usr/share/bedtools/test/intersect/sortAndNaming/q1_gls.bed
|
text/plain
|
root:root
|
0o644
|
139 bytes
|
/usr/share/bedtools/test/intersect/sortAndNaming/num_missing.bed
|
text/plain
|
root:root
|
0o644
|
34 bytes
|
/usr/share/bedtools/test/intersect/aWithHeaderVsB.txt
|
text/plain
|
root:root
|
0o644
|
198.2 KB
|
/usr/share/bedtools/test/intersect/a_testZeroLen.bed
|
text/plain
|
root:root
|
0o644
|
40 bytes
|
/usr/share/bedtools/test/intersect/bed6.bed
|
text/plain
|
root:root
|
0o644
|
25 bytes
|
/usr/share/bedtools/test/intersect/a_gzipped.bed.gz
|
application/gzip
|
root:root
|
0o644
|
63 bytes
|
/usr/share/bedtools/test/intersect/c.bed
|
text/plain
|
root:root
|
0o644
|
18 bytes
|
/usr/share/bedtools/test/intersect/gdc.bam
|
application/gzip
|
root:root
|
0o644
|
204 bytes
|
/usr/share/bedtools/test/intersect/bug150_b.bed
|
text/plain
|
root:root
|
0o644
|
79 bytes
|
/usr/share/bedtools/test/intersect/y.bed
|
text/plain
|
root:root
|
0o644
|
34 bytes
|
/usr/share/bedtools/test/intersect/three_blocks_match.bed
|
text/plain
|
root:root
|
0o644
|
60 bytes
|
/usr/share/bedtools/test/intersect/human.hg19.genome
|
text/plain
|
root:root
|
0o644
|
1.9 KB
|
/usr/share/bedtools/test/intersect/nonamecheck_a.bed
|
text/plain
|
root:root
|
0o644
|
11 bytes
|
/usr/share/bedtools/test/intersect/bug150_a.bed
|
text/plain
|
root:root
|
0o644
|
44 bytes
|
/usr/share/bedtools/test/intersect/x.bed
|
text/plain
|
root:root
|
0o644
|
37 bytes
|
/usr/share/bedtools/test/intersect/svlen.vcf
|
text/plain
|
root:root
|
0o644
|
592 bytes
|
/usr/share/bedtools/test/intersect/two_blocks_partial.bed
|
text/plain
|
root:root
|
0o644
|
54 bytes
|
/usr/share/bedtools/test/intersect/bug223_sv1_b.vcf
|
text/plain
|
root:root
|
0o644
|
401 bytes
|
/usr/share/bedtools/test/intersect/oneUnmapped.bam
|
application/gzip
|
root:root
|
0o644
|
2.5 KB
|
/usr/share/bedtools/test/intersect/bug223_sv1_a.vcf
|
text/plain
|
root:root
|
0o644
|
408 bytes
|
/usr/share/bedtools/test/intersect/a_with_bothUnmapped.bam
|
application/gzip
|
root:root
|
0o644
|
2.8 KB
|
/usr/share/bedtools/test/intersect/one_block.sam
|
text/plain
|
root:root
|
0o644
|
162 bytes
|
/usr/share/bedtools/test/intersect/bug44_a.vcf.gz
|
application/gzip
|
root:root
|
0o644
|
31.7 KB
|
/usr/share/bedtools/test/intersect/a.bed
|
text/plain
|
root:root
|
0o644
|
38 bytes
|
/usr/share/bedtools/test/intersect/a_bgzipped.bed.gz
|
application/gzip
|
root:root
|
0o644
|
85 bytes
|
/usr/share/bedtools/test/intersect/gdc_one.bed
|
text/plain
|
root:root
|
0o644
|
13 bytes
|
/usr/share/bedtools/test/intersect/oneRecordNoNewline.bed
|
text/plain
|
root:root
|
0o644
|
21 bytes
|
/usr/share/bedtools/test/intersect/human.hg19.vSort.genome
|
text/plain
|
root:root
|
0o644
|
1.9 KB
|
/usr/share/bedtools/test/intersect/bed4.bed
|
text/plain
|
root:root
|
0o644
|
17 bytes
|
/usr/share/bedtools/test/intersect/x.bam
|
application/gzip
|
root:root
|
0o644
|
1.7 KB
|
/usr/share/bedtools/test/intersect/three_blocks_nomatch.bed
|
text/plain
|
root:root
|
0o644
|
63 bytes
|
/usr/share/bedtools/test/intersect/bug187_a.bed
|
text/plain
|
root:root
|
0o644
|
23 bytes
|
/usr/share/bedtools/test/intersect/bed3.bed
|
text/plain
|
root:root
|
0o644
|
11 bytes
|
/usr/share/bedtools/test/intersect/dosLineChar_a.bed
|
text/plain
|
root:root
|
0o644
|
72 bytes
|
/usr/share/bedtools/test/intersect/test-intersect.sh
|
text/x-shellscript
|
root:root
|
0o755
|
29.3 KB
|
/usr/share/bedtools/test/intersect/gdc.gff
|
text/plain
|
root:root
|
0o644
|
746 bytes
|
/usr/share/bedtools/test/intersect/bed5.bed
|
text/plain
|
root:root
|
0o644
|
22 bytes
|
/usr/share/bedtools/test/intersect/nonamecheck_b.bed
|
text/plain
|
root:root
|
0o644
|
12 bytes
|
/usr/share/bedtools/test/intersect/foo
|
text/plain
|
root:root
|
0o644
|
82 bytes
|
/usr/share/bedtools/test/intersect/bug223_f.vcf
|
text/plain
|
root:root
|
0o644
|
405 bytes
|
/usr/share/bedtools/test/intersect/bedplus.bed
|
text/plain
|
root:root
|
0o644
|
52 bytes
|
/usr/share/bedtools/test/intersect/j1.bed
|
text/plain
|
root:root
|
0o644
|
26 bytes
|
/usr/share/bedtools/test/intersect/bed6.strand.bed
|
text/plain
|
root:root
|
0o644
|
24 bytes
|
/usr/share/bedtools/test/intersect/a_vcfSVtest.vcf
|
text/plain
|
root:root
|
0o644
|
884 bytes
|
/usr/share/bedtools/test/intersect/mapped_and_unmapped.sam
|
text/plain
|
root:root
|
0o644
|
255 bytes
|
/usr/share/bedtools/test/intersect/b_testZeroLen.bed
|
text/plain
|
root:root
|
0o644
|
27 bytes
|
/usr/share/bedtools/test/intersect/chromsOutOfOrder.bed
|
text/plain
|
root:root
|
0o644
|
52 bytes
|
/usr/share/bedtools/test/intersect/two_blocks.sam
|
text/plain
|
root:root
|
0o644
|
167 bytes
|
/usr/share/bedtools/test/bamtobed/three_blocks.sam
|
text/plain
|
root:root
|
0o644
|
176 bytes
|
/usr/share/bedtools/test/bamtobed/two_blocks_w_D.sam
|
text/plain
|
root:root
|
0o644
|
540 bytes
|
/usr/share/bedtools/test/bamtobed/one_block.sam
|
text/plain
|
root:root
|
0o644
|
162 bytes
|
/usr/share/bedtools/test/bamtobed/test-bamtobed.sh
|
text/x-shellscript
|
root:root
|
0o755
|
5.4 KB
|
/usr/share/bedtools/test/bamtobed/two_blocks.sam
|
text/plain
|
root:root
|
0o644
|
167 bytes
|
/usr/share/bedtools/test/sample/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/sample/test-sample.sh
|
text/x-shellscript
|
root:root
|
0o755
|
3.9 KB
|
/usr/share/bedtools/test/sample/human.hg19.genome
|
text/plain
|
root:root
|
0o644
|
1.9 KB
|
/usr/share/bedtools/test/makewindows/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/makewindows/test-makewindows.sh
|
text/x-shellscript
|
root:root
|
0o755
|
3.0 KB
|
/usr/share/bedtools/test/makewindows/input.bed
|
text/plain
|
root:root
|
0o644
|
66 bytes
|
/usr/share/bedtools/test/groupBy/
|
|
root:root
|
0o755
|
|
/usr/share/bedtools/test/groupBy/values3.no_header.bed
|
text/plain
|
root:root
|
0o644
|
227 bytes
|
/usr/share/bedtools/test/groupBy/values3.7fields.header.bed
|
text/plain
|
root:root
|
0o644
|
276 bytes
|
/usr/share/bedtools/test/groupBy/noPosvalues.header.bed
|
text/plain
|
root:root
|
0o644
|
302 bytes
|
/usr/share/bedtools/test/groupBy/values3.unmarked_header.bed
|
text/plain
|
root:root
|
0o644
|
249 bytes
|
/usr/share/bedtools/test/groupBy/values3.header.bed
|
text/plain
|
root:root
|
0o644
|
250 bytes
|
/usr/share/bedtools/test/groupBy/test-groupby.sh
|
text/x-shellscript
|
root:root
|
0o755
|
7.5 KB
|
/usr/share/bedtools/test/groupBy/gdc.bam
|
application/gzip
|
root:root
|
0o644
|
204 bytes
|
/usr/share/bedtools/test/groupBy/values3_case.header.bed
|
text/plain
|
root:root
|
0o644
|
250 bytes
|
/usr/share/bedtools/test/groupBy/a_vcfSVtest.vcf
|
text/plain
|
root:root
|
0o644
|
884 bytes
|
/usr/share/doc/
|
|
root:root
|
0o755
|
|
/usr/share/doc/bedtools-test/
|
|
root:root
|
0o755
|
|
/usr/share/doc/bedtools-test/copyright
|
text/plain
|
root:root
|
0o644
|
5.2 KB
|
/usr/share/doc/bedtools-test/changelog.Debian.gz
|
application/gzip
|
root:root
|
0o644
|
1.7 KB
|