/usr/share/bedtools/test/fisher/cmp.sh is in bedtools-test 2.25.0-1.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 | #!/bin/bash
set -eo pipefail
echo "fisher,shuffled"
for i in $(seq 1000); do
fisher=$(python ./sim.py | tail -1 | cut -f 2)
shuffle=$(bash shuf.sh)
echo "$fisher,$shuffle"
done
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