/usr/share/bedtools/test/test.sh is in bedtools-test 2.25.0-1.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 | #!/bin/bash
echo " Performing general tests:"
cd general; bash test-general.sh; cd ..
echo " Testing bedtools bed12tobed6:"
cd bed12tobed6; bash test-bed12tobed6.sh; cd ..
echo " Testing bedtools bamtobed:"
cd bamtobed; bash test-bamtobed.sh; cd ..
echo " Testing bedtools closest:"
cd closest; bash test-closest.sh; cd ..
echo " Testing bedtools cluster:"
cd cluster; bash test-cluster.sh; cd ..
echo " Testing bedtools coverage:"
cd coverage; bash test-coverage.sh; cd ..
echo " Testing bedtools expand:"
cd expand; bash test-expand.sh; cd ..
echo " Testing bedtools flank:"
cd flank; bash test-flank.sh; cd ..
echo " Testing bedtools fisher:"
cd fisher; bash test-fisher.sh; cd ..
echo " Testing bedtools genomecov:"
cd genomecov; bash test-genomecov.sh; cd ..
echo " Testing bedtools getfasta:"
cd getfasta; bash test-getfasta.sh; cd ..
echo " Testing bedtools intersect:"
cd intersect; bash test-intersect.sh; bash new_test-intersect.sh; cd ..
echo " Testing bedtools jaccard:"
cd jaccard; bash test-jaccard.sh; cd ..
echo " Testing bedtools map:"
cd map; bash test-map.sh; cd ..
echo " Testing bedtools merge:"
cd merge; bash test-merge.sh; cd ..
echo " Testing bedtools multicov:"
cd multicov; bash test-multicov.sh; cd ..
echo " Testing bedtools reldist:"
cd reldist; bash test-reldist.sh; cd ..
echo " Testing bedtools slop:"
cd slop; bash test-slop.sh; cd ..
echo " Testing bedtools sort:"
cd slop; bash test-sort.sh; cd ..
echo " Testing bedtools shuffle:"
cd shuffle; bash test-shuffle.sh; cd ..
echo " Testing bedtools subtract:"
cd subtract; bash test-subtract.sh; cd ..
echo " Testing bedtools sample:"
cd sample; bash test-sample.sh; cd ..
echo " Testing bedtools split:"
cd split; bash test-split.sh; cd ..
echo " Testing bedtools spacing:"
cd spacing; bash test-spacing.sh; cd ..
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