This package is 166.1 KB.
It is available at http://ftp.debian.org/debian/pool/main/r/roary/roary_3.8.0+dfsg-1_all.deb
.
View its full control file here:
debian/control.
high speed stand alone pan genome pipeline
This package depends on:
perl, bioperl, libarray-utils-perl, libenv-path-perl, libexception-class-perl, libfile-find-rule-perl, libfile-grep-perl, libfile-slurper-perl, libfile-which-perl, libfindbin-libs-perl, libgraph-perl, libgraph-readwrite-perl, liblog-log4perl-perl, libmoose-perl, libperlio-utf8-strict-perl, libtest-most-perl, libtest-file-perl, libtest-files-perl, libtest-output-perl, libtext-csv-perl, bedtools, cd-hit, ncbi-blast+, mcl, parallel, prank, r-base-core, r-cran-ggplot2, mafft, fasttree.
This package does not recommend any other package.
This package does not suggest any other package.
This package does not conflict with any other package.
roary 3.8.0+dfsg-1 is in debian - stretch / main. This package's architecture is: architectureless.
| File | Mime Type | Owner | Mode | Size |
|---|---|---|---|---|
/usr/
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root:root | 0o755 | ||
/usr/bin/
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root:root | 0o755 | ||
/usr/bin/create_pan_genome
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text/x-perl | root:root | 0o755 | 971 bytes |
/usr/bin/create_pan_genome_plots
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text/plain | root:root | 0o755 | 3.1 KB |
/usr/bin/extract_proteome_from_gff
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text/x-perl | root:root | 0o755 | 952 bytes |
/usr/bin/iterative_cdhit
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text/x-perl | root:root | 0o755 | 841 bytes |
/usr/bin/pan_genome_assembly_statistics
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text/x-perl | root:root | 0o755 | 1.0 KB |
/usr/bin/pan_genome_core_alignment
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text/x-perl | root:root | 0o755 | 1.1 KB |
/usr/bin/pan_genome_post_analysis
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text/x-perl | root:root | 0o755 | 936 bytes |
/usr/bin/pan_genome_reorder_spreadsheet
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text/x-perl | root:root | 0o755 | 1.0 KB |
/usr/bin/parallel_all_against_all_blastp
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text/x-perl | root:root | 0o755 | 1.0 KB |
/usr/bin/protein_alignment_from_nucleotides
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text/x-perl | root:root | 0o755 | 1.1 KB |
/usr/bin/query_pan_genome
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text/x-perl | root:root | 0o755 | 985 bytes |
/usr/bin/roary
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text/x-perl | root:root | 0o755 | 850 bytes |
/usr/bin/roary-create_pan_genome_plots.R
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text/plain | root:root | 0o755 | 2.8 KB |
/usr/bin/roary-pan_genome_reorder_spreadsheet
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text/x-perl | root:root | 0o755 | 1.0 KB |
/usr/bin/roary-query_pan_genome
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text/x-perl | root:root | 0o755 | 985 bytes |
/usr/bin/transfer_annotation_to_groups
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text/x-perl | root:root | 0o755 | 1.1 KB |
/usr/share/
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root:root | 0o755 | ||
/usr/share/doc/
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root:root | 0o755 | ||
/usr/share/doc/roary/
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root:root | 0o755 | ||
/usr/share/doc/roary/changelog.Debian.gz
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application/gzip | root:root | 0o644 | 1.0 KB |
/usr/share/doc/roary/copyright
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text/plain | root:root | 0o644 | 1.0 KB |
/usr/share/lintian/
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root:root | 0o755 | ||
/usr/share/lintian/overrides/
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root:root | 0o755 | ||
/usr/share/lintian/overrides/roary
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text/plain | root:root | 0o644 | 70 bytes |
/usr/share/man/
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root:root | 0o755 | ||
/usr/share/man/man1/
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root:root | 0o755 | ||
/usr/share/man/man1/create_pan_genome.1p.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man1/create_pan_genome_plots.1p.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man1/extract_proteome_from_gff.1p.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man1/iterative_cdhit.1p.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man1/pan_genome_assembly_statistics.1p.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man1/pan_genome_core_alignment.1p.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man1/pan_genome_post_analysis.1p.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man1/pan_genome_reorder_spreadsheet.1p.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man1/parallel_all_against_all_blastp.1p.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man1/protein_alignment_from_nucleotides.1p.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man1/query_pan_genome.1p.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man1/roary.1p.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man1/roary-pan_genome_reorder_spreadsheet.1p.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man1/roary-query_pan_genome.1p.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man1/transfer_annotation_to_groups.1p.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/
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/usr/share/man/man3/Bio::Roary.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::AccessoryBinaryFasta.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::AccessoryClustering.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::AnalyseGroups.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::AnnotateGroups.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::AssemblyStatistics.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::BedFromGFFRole.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::ChunkFastaFile.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::ClustersRole.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::CombinedProteome.3pm.gz
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application/gzip | root:root | 0o644 | 1.5 KB |
/usr/share/man/man3/Bio::Roary::CommandLine::AssemblyStatistics.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::CommandLine::Common.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::CommandLine::CreatePanGenome.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::CommandLine::ExtractProteomeFromGff.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::CommandLine::GeneAlignmentFromNucleotides.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::CommandLine::IterativeCdhit.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::CommandLine::ParallelAllAgainstAllBlastp.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::CommandLine::QueryRoary.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::CommandLine::Roary.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::CommandLine::RoaryCoreAlignment.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::CommandLine::RoaryPostAnalysis.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::CommandLine::RoaryReorderSpreadsheet.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::CommandLine::TransferAnnotationToGroups.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::ContigsToGeneIDsFromGFF.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::Exceptions.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::External::Blastp.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::External::Cdhit.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::External::CheckTools.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::External::Fasttree.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::External::GeneAlignmentFromNucleotides.3pm.gz
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application/gzip | root:root | 0o644 | 1.5 KB |
/usr/share/man/man3/Bio::Roary::External::IterativeCdhit.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::External::Mafft.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::External::Makeblastdb.3pm.gz
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application/gzip | root:root | 0o644 | 1.5 KB |
/usr/share/man/man3/Bio::Roary::External::Mcl.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::External::PostAnalysis.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::External::Prank.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::ExtractCoreGenesFromSpreadsheet.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFF.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::ExtractProteomeFromGFFs.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::FilterFullClusters.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::FilterUnknownsFromFasta.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::GeneNamesFromGFF.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::GroupLabels.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::GroupStatistics.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::InflateClusters.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::IterativeCdhit.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::JobRunner::Local.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::JobRunner::Parallel.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::JobRunner::Role.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::LookupGeneFiles.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::MergeMultifastaAlignments.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::OrderGenes.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::Output::BlastIdentityFrequency.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::Output::CoreGeneAlignmentCoordinatesEMBL.3pm.gz
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application/gzip | root:root | 0o644 | 1.5 KB |
/usr/share/man/man3/Bio::Roary::Output::DifferenceBetweenSets.3pm.gz
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application/gzip | root:root | 0o644 | 1.5 KB |
/usr/share/man/man3/Bio::Roary::Output::EmblGroups.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::Output::EMBLHeaderCommon.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::Output::GroupMultifasta.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaNucleotide.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastaProtein.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastas.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::Output::GroupsMultifastasNucleotide.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::Output::NumberOfGroups.3pm.gz
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/usr/share/man/man3/Bio::Roary::Output::QueryGroups.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::ParallelAllAgainstAllBlast.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::ParseGFFAnnotationRole.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::PostAnalysis.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::PrepareInputFiles.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::PresenceAbsenceMatrix.3pm.gz
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application/gzip | root:root | 0o644 | 1.5 KB |
/usr/share/man/man3/Bio::Roary::QC::Report.3pm.gz
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application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/man/man3/Bio::Roary::ReformatInputGFFs.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::ReorderSpreadsheet.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::SampleOrder.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::SequenceLengths.3pm.gz
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application/gzip | root:root | 0o644 | 1.4 KB |
/usr/share/man/man3/Bio::Roary::SortFasta.3pm.gz
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/usr/share/man/man3/Bio::Roary::SplitGroups.3pm.gz
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/usr/share/man/man3/Bio::Roary::SpreadsheetRole.3pm.gz
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/usr/share/perl5/
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/usr/share/perl5/Bio/
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/usr/share/perl5/Bio/Roary/
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/usr/share/perl5/Bio/Roary/AccessoryBinaryFasta.pm
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/usr/share/perl5/Bio/Roary/AccessoryClustering.pm
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text/plain | root:root | 0o644 | 3.8 KB |
/usr/share/perl5/Bio/Roary/AnalyseGroups.pm
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text/plain | root:root | 0o644 | 3.9 KB |
/usr/share/perl5/Bio/Roary/AnnotateGroups.pm
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text/plain | root:root | 0o644 | 11.9 KB |
/usr/share/perl5/Bio/Roary/AssemblyStatistics.pm
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text/plain | root:root | 0o644 | 8.4 KB |
/usr/share/perl5/Bio/Roary/BedFromGFFRole.pm
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text/plain | root:root | 0o644 | 2.4 KB |
/usr/share/perl5/Bio/Roary/ChunkFastaFile.pm
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text/plain | root:root | 0o644 | 3.0 KB |
/usr/share/perl5/Bio/Roary/ClustersRole.pm
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text/plain | root:root | 0o644 | 2.1 KB |
/usr/share/perl5/Bio/Roary/CombinedProteome.pm
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text/plain | root:root | 0o644 | 1.9 KB |
/usr/share/perl5/Bio/Roary/CommandLine/
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/usr/share/perl5/Bio/Roary/CommandLine/AssemblyStatistics.pm
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/usr/share/perl5/Bio/Roary/CommandLine/Common.pm
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text/plain | root:root | 0o644 | 1.4 KB |
/usr/share/perl5/Bio/Roary/CommandLine/CreatePanGenome.pm
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/usr/share/perl5/Bio/Roary/CommandLine/ExtractProteomeFromGff.pm
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text/plain | root:root | 0o644 | 4.4 KB |
/usr/share/perl5/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm
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text/plain | root:root | 0o644 | 4.8 KB |
/usr/share/perl5/Bio/Roary/CommandLine/IterativeCdhit.pm
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text/plain | root:root | 0o644 | 5.6 KB |
/usr/share/perl5/Bio/Roary/CommandLine/ParallelAllAgainstAllBlastp.pm
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text/plain | root:root | 0o644 | 5.2 KB |
/usr/share/perl5/Bio/Roary/CommandLine/QueryRoary.pm
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text/plain | root:root | 0o644 | 10.0 KB |
/usr/share/perl5/Bio/Roary/CommandLine/RoaryCoreAlignment.pm
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text/plain | root:root | 0o644 | 5.7 KB |
/usr/share/perl5/Bio/Roary/CommandLine/Roary.pm
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/usr/share/perl5/Bio/Roary/CommandLine/RoaryPostAnalysis.pm
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/usr/share/perl5/Bio/Roary/CommandLine/RoaryReorderSpreadsheet.pm
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/usr/share/perl5/Bio/Roary/CommandLine/TransferAnnotationToGroups.pm
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/usr/share/perl5/Bio/Roary/ContigsToGeneIDsFromGFF.pm
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/usr/share/perl5/Bio/Roary/Exceptions.pm
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/usr/share/perl5/Bio/Roary/External/
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/usr/share/perl5/Bio/Roary/External/Blastp.pm
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/usr/share/perl5/Bio/Roary/External/Cdhit.pm
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/usr/share/perl5/Bio/Roary/External/CheckTools.pm
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/usr/share/perl5/Bio/Roary/External/Fasttree.pm
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/usr/share/perl5/Bio/Roary/External/GeneAlignmentFromNucleotides.pm
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/usr/share/perl5/Bio/Roary/External/IterativeCdhit.pm
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/usr/share/perl5/Bio/Roary/External/Mafft.pm
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/usr/share/perl5/Bio/Roary/External/Makeblastdb.pm
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/usr/share/perl5/Bio/Roary/External/Mcl.pm
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/usr/share/perl5/Bio/Roary/External/PostAnalysis.pm
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/usr/share/perl5/Bio/Roary/External/Prank.pm
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/usr/share/perl5/Bio/Roary/ExtractCoreGenesFromSpreadsheet.pm
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/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFF.pm
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/usr/share/perl5/Bio/Roary/ExtractProteomeFromGFFs.pm
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/usr/share/perl5/Bio/Roary/FilterFullClusters.pm
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/usr/share/perl5/Bio/Roary/FilterUnknownsFromFasta.pm
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/usr/share/perl5/Bio/Roary/GeneNamesFromGFF.pm
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/usr/share/perl5/Bio/Roary/GroupLabels.pm
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/usr/share/perl5/Bio/Roary/GroupStatistics.pm
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/usr/share/perl5/Bio/Roary/InflateClusters.pm
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/usr/share/perl5/Bio/Roary/IterativeCdhit.pm
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/usr/share/perl5/Bio/Roary/JobRunner/
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/usr/share/perl5/Bio/Roary/JobRunner/Local.pm
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/usr/share/perl5/Bio/Roary/JobRunner/Parallel.pm
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