/usr/include/libphylo/fastStartTree.h is in rate4site 3.0.0-2.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 | // $Id: fastStartTree.h 962 2006-11-07 15:13:34Z privmane $
#ifndef ___FAST_START_TREE
#define ___FAST_START_TREE
#include "definitions.h"
#include "tree.h"
#include "stochasticProcess.h"
#include "sequenceContainer.h"
#include <iostream>
using namespace std;
tree getBestMLTreeFromManyNJtrees(sequenceContainer & allTogether,
stochasticProcess& sp,
const int numOfNJtrees,
const MDOUBLE tmpForStartingTreeSearch,
const MDOUBLE epslionWeights,
ostream& out);
#endif
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