/usr/ is in rate4site 3.0.0-2.
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/usr/lib/
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/usr/lib/x86_64-linux-gnu/
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/usr/lib/x86_64-linux-gnu/libphylo.a
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/usr/include/
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/usr/include/libphylo/
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/usr/include/libphylo/HIVb.dat.q
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/usr/include/libphylo/nucleotide.h
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/usr/share/doc/
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/usr/share/doc/rate4site/copyright
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/usr/share/doc/rate4site/changelog.Debian.gz
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/usr/share/man/
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/usr/bin/
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/usr/bin/rate4site
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/usr/bin/rate4site_doublerep
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/usr/include/libphylo/computeSubstitutionCounts.h
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/usr/include/libphylo/codon.h
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/usr/include/libphylo/nuclearCiliate.code
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/usr/include/libphylo/dayhoff.dat
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/usr/include/libphylo/distances2Tree.h
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/usr/include/libphylo/nuclearStandard.code
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/usr/include/libphylo/mtREV24.dat
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/usr/include/libphylo/wag.dat
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/usr/include/libphylo/pijAccelerator.h
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/usr/include/libphylo/replacementModel.h
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/usr/include/libphylo/dayhoff.dat.q
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/usr/include/libphylo/gainLossAlphabet.h
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