About

This package is 55.7 KB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/t/transdecoder/transdecoder_2.0.1+dfsg-2_all.deb .

View its full control file here: debian/control.

Description

find coding regions within RNA transcript sequences

Relations

This package depends on: perl, cd-hit, liburi-perl.

This package does not recommend any other package.

This package does not suggest any other package.

This package does not conflict with any other package.

Package Contents

This package is indexed.

transdecoder 2.0.1+dfsg-2 is in ubuntu - xenial / universe. This package's architecture is: architectureless.

File Mime Type Owner Mode Size
/usr/ root:root 0o755
/usr/bin/ root:root 0o755
/usr/bin/TransDecoder.LongOrfs root:root 0o777
/usr/bin/TransDecoder.Predict root:root 0o777
/usr/lib/ root:root 0o755
/usr/lib/transdecoder/ root:root 0o755
/usr/lib/transdecoder/PerlLib/ root:root 0o755
/usr/lib/transdecoder/PerlLib/Fasta_reader.pm text/x-perl root:root 0o755 3.4 KB
/usr/lib/transdecoder/PerlLib/Gene_obj_indexer.pm text/x-perl root:root 0o755 1.3 KB
/usr/lib/transdecoder/PerlLib/Gene_obj.pm text/x-perl root:root 0o755 139.0 KB
/usr/lib/transdecoder/PerlLib/GFF3_utils.pm text/x-perl root:root 0o644 8.2 KB
/usr/lib/transdecoder/PerlLib/Longest_orf.pm text/x-perl root:root 0o755 9.5 KB
/usr/lib/transdecoder/PerlLib/Nuc_translator.pm text/x-perl root:root 0o755 10.1 KB
/usr/lib/transdecoder/PerlLib/TiedHash.pm text/x-perl root:root 0o755 3.6 KB
/usr/lib/transdecoder/TransDecoder.LongOrfs text/x-perl root:root 0o755 8.0 KB
/usr/lib/transdecoder/TransDecoder.Predict text/x-perl root:root 0o755 9.8 KB
/usr/lib/transdecoder/util/ root:root 0o755
/usr/lib/transdecoder/util/bin/ root:root 0o755
/usr/lib/transdecoder/util/bin/.hidden application/x-empty root:root 0o644 0 bytes
/usr/lib/transdecoder/util/cdna_alignment_orf_to_genome_orf.pl text/x-perl root:root 0o755 8.8 KB
/usr/lib/transdecoder/util/compute_base_probs.pl text/x-perl root:root 0o755 1.3 KB
/usr/lib/transdecoder/util/cufflinks_gtf_genome_to_cdna_fasta.pl text/x-perl root:root 0o755 2.4 KB
/usr/lib/transdecoder/util/cufflinks_gtf_to_alignment_gff3.pl text/x-perl root:root 0o755 1.9 KB
/usr/lib/transdecoder/util/cufflinks_gtf_to_bed.pl text/x-perl root:root 0o755 1.9 KB
/usr/lib/transdecoder/util/ffindex_resume.pl text/x-perl root:root 0o755 1012 bytes
/usr/lib/transdecoder/util/gene_list_to_gff.pl text/x-perl root:root 0o755 864 bytes
/usr/lib/transdecoder/util/get_top_longest_fasta_entries.pl text/x-perl root:root 0o755 746 bytes
/usr/lib/transdecoder/util/gff3_file_to_bed.pl text/x-perl root:root 0o755 901 bytes
/usr/lib/transdecoder/util/gff3_file_to_proteins.pl text/x-perl root:root 0o755 4.7 KB
/usr/lib/transdecoder/util/index_gff3_files_by_isoform.pl text/x-perl root:root 0o755 2.0 KB
/usr/lib/transdecoder/util/nr_ORFs_gff3.pl text/x-perl root:root 0o755 1.6 KB
/usr/lib/transdecoder/util/pfam_mpi.pbs text/x-shellscript root:root 0o755 950 bytes
/usr/lib/transdecoder/util/pfam_runner.pl text/x-perl root:root 0o755 9.0 KB
/usr/lib/transdecoder/util/remove_eclipsed_ORFs.pl text/x-perl root:root 0o755 2.3 KB
/usr/lib/transdecoder/util/score_CDS_liklihood_all_6_frames.pl text/x-perl root:root 0o755 1.9 KB
/usr/lib/transdecoder/util/seq_n_baseprobs_to_logliklihood_vals.pl text/x-perl root:root 0o755 3.8 KB
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/transdecoder/ root:root 0o755
/usr/share/doc/transdecoder/changelog.Debian.gz application/gzip root:root 0o644 355 bytes
/usr/share/doc/transdecoder/copyright text/plain root:root 0o644 1.8 KB
/usr/share/man/ root:root 0o755
/usr/share/man/man1/ root:root 0o755
/usr/share/man/man1/TransDecoder.LongOrfs.1.gz application/gzip root:root 0o644 2.2 KB
/usr/share/man/man1/TransDecoder.Predict.1.gz application/gzip root:root 0o644 2.1 KB