/usr/ is in transdecoder 2.0.1+dfsg-2.
This file is owned by root:root, with mode 0o755.
..
/usr/share/
/usr/share/doc/
/usr/share/doc/transdecoder/
/usr/share/doc/transdecoder/copyright
/usr/share/doc/transdecoder/changelog.Debian.gz
/usr/share/man/
/usr/share/man/man1/
/usr/share/man/man1/TransDecoder.Predict.1.gz
/usr/share/man/man1/TransDecoder.LongOrfs.1.gz
/usr/bin/
/usr/lib/
/usr/lib/transdecoder/
/usr/lib/transdecoder/util/
/usr/lib/transdecoder/util/ffindex_resume.pl
/usr/lib/transdecoder/util/index_gff3_files_by_isoform.pl
/usr/lib/transdecoder/util/bin/
/usr/lib/transdecoder/util/bin/.hidden
/usr/lib/transdecoder/util/compute_base_probs.pl
/usr/lib/transdecoder/util/pfam_runner.pl
/usr/lib/transdecoder/util/cufflinks_gtf_to_alignment_gff3.pl
/usr/lib/transdecoder/util/pfam_mpi.pbs
/usr/lib/transdecoder/util/gene_list_to_gff.pl
/usr/lib/transdecoder/util/seq_n_baseprobs_to_logliklihood_vals.pl
/usr/lib/transdecoder/util/gff3_file_to_bed.pl
/usr/lib/transdecoder/util/gff3_file_to_proteins.pl
/usr/lib/transdecoder/util/get_top_longest_fasta_entries.pl
/usr/lib/transdecoder/util/cdna_alignment_orf_to_genome_orf.pl
/usr/lib/transdecoder/util/score_CDS_liklihood_all_6_frames.pl
/usr/lib/transdecoder/util/cufflinks_gtf_genome_to_cdna_fasta.pl
/usr/lib/transdecoder/util/remove_eclipsed_ORFs.pl
/usr/lib/transdecoder/util/nr_ORFs_gff3.pl
/usr/lib/transdecoder/util/cufflinks_gtf_to_bed.pl
/usr/lib/transdecoder/PerlLib/
/usr/lib/transdecoder/PerlLib/GFF3_utils.pm
/usr/lib/transdecoder/PerlLib/Nuc_translator.pm
/usr/lib/transdecoder/PerlLib/Gene_obj_indexer.pm
/usr/lib/transdecoder/PerlLib/TiedHash.pm
/usr/lib/transdecoder/PerlLib/Fasta_reader.pm
/usr/lib/transdecoder/PerlLib/Longest_orf.pm
/usr/lib/transdecoder/PerlLib/Gene_obj.pm
/usr/lib/transdecoder/TransDecoder.Predict
/usr/lib/transdecoder/TransDecoder.LongOrfs
/usr/bin/TransDecoder.Predict
/usr/bin/TransDecoder.LongOrfs