/usr/share/python/
|
|
root:root
|
0o755
|
|
/usr/share/python/runtime.d/
|
|
root:root
|
0o755
|
|
/usr/share/python/runtime.d/qiime.rtupdate
|
text/x-shellscript
|
root:root
|
0o755
|
125 bytes
|
/usr/share/qiime/
|
|
root:root
|
0o755
|
|
/usr/share/qiime/support_files/
|
|
root:root
|
0o755
|
|
/usr/share/qiime/support_files/R/
|
|
root:root
|
0o755
|
|
/usr/share/qiime/support_files/R/util.r
|
text/plain
|
root:root
|
0o644
|
4.9 KB
|
/usr/share/qiime/support_files/R/loaddata.r
|
text/plain
|
root:root
|
0o644
|
4.7 KB
|
/usr/share/qiime/support_files/R/detrend.r
|
text/plain
|
root:root
|
0o644
|
3.4 KB
|
/usr/share/qiime/support_files/R/adonis.r
|
text/plain
|
root:root
|
0o644
|
2.4 KB
|
/usr/share/qiime/support_files/R/randomforests.r
|
text/plain
|
root:root
|
0o644
|
3.6 KB
|
/usr/share/qiime/support_files/R/dbrda.r
|
text/plain
|
root:root
|
0o644
|
3.1 KB
|
/usr/share/qiime/support_files/R/detrend_util.r
|
text/plain
|
root:root
|
0o644
|
9.6 KB
|
/usr/share/qiime/support_files/R/permdisp.r
|
text/plain
|
root:root
|
0o644
|
2.5 KB
|
/usr/share/qiime/support_files/R/mrpp.r
|
text/plain
|
root:root
|
0o644
|
2.4 KB
|
/usr/share/qiime/support_files/R/randomforests_util.r
|
text/plain
|
root:root
|
0o644
|
6.8 KB
|
/usr/share/qiime/support_files/R/morans_i.r
|
text/plain
|
root:root
|
0o644
|
2.4 KB
|
/usr/share/qiime/support_files/denoiser/
|
|
root:root
|
0o755
|
|
/usr/share/qiime/support_files/denoiser/Data/
|
|
root:root
|
0o755
|
|
/usr/share/qiime/support_files/denoiser/Data/FLX_error_profile.dat
|
text/plain
|
root:root
|
0o644
|
136.8 KB
|
/usr/share/qiime/support_files/denoiser/Data/Titanium_error_profile.dat
|
text/plain
|
root:root
|
0o644
|
95.6 KB
|
/usr/share/qiime/support_files/denoiser/Data/probabilities.txt
|
text/plain
|
root:root
|
0o644
|
190.7 KB
|
/usr/share/qiime/support_files/images/
|
|
root:root
|
0o755
|
|
/usr/share/qiime/support_files/images/qiime_header.png
|
image/png
|
root:root
|
0o644
|
5.3 KB
|
/usr/share/qiime/support_files/js/
|
|
root:root
|
0o755
|
|
/usr/share/qiime/support_files/js/histograms.js
|
text/plain
|
root:root
|
0o644
|
1.6 KB
|
/usr/share/qiime/support_files/js/overlib.js
|
text/plain
|
root:root
|
0o644
|
49.5 KB
|
/usr/share/qiime/support_files/js/jquery.tablednd_0_5.js
|
text/plain
|
root:root
|
0o644
|
16.3 KB
|
/usr/share/qiime/support_files/js/otu_count_display.js
|
text/plain
|
root:root
|
0o644
|
17.1 KB
|
/usr/share/qiime/support_files/css/
|
|
root:root
|
0o755
|
|
/usr/share/qiime/support_files/css/qiime_style.css
|
text/plain
|
root:root
|
0o644
|
8.1 KB
|
/usr/share/pyshared/
|
|
root:root
|
0o755
|
|
/usr/share/pyshared/qiime/
|
|
root:root
|
0o755
|
|
/usr/share/pyshared/qiime/make_otu_heatmap.py
|
text/x-python
|
root:root
|
0o644
|
7.8 KB
|
/usr/share/pyshared/qiime/add_qiime_labels.py
|
text/x-python
|
root:root
|
0o755
|
5.1 KB
|
/usr/share/pyshared/qiime/util.py
|
text/x-python
|
root:root
|
0o644
|
76.6 KB
|
/usr/share/pyshared/qiime/transform_coordinate_matrices.py
|
text/x-python
|
root:root
|
0o644
|
9.7 KB
|
/usr/share/pyshared/qiime/trim_sff_primers.py
|
text/x-python
|
root:root
|
0o644
|
5.9 KB
|
/usr/share/pyshared/qiime/validate_demultiplexed_fasta.py
|
text/x-python
|
root:root
|
0o755
|
19.9 KB
|
/usr/share/pyshared/qiime/beta_metrics.py
|
text/x-python
|
root:root
|
0o644
|
7.5 KB
|
/usr/share/pyshared/qiime/adjust_seq_orientation.py
|
text/x-python
|
root:root
|
0o755
|
1.5 KB
|
/usr/share/pyshared/qiime/sort.py
|
text/x-python
|
root:root
|
0o644
|
7.1 KB
|
/usr/share/pyshared/qiime/compare_categories.py
|
text/x-python
|
root:root
|
0o755
|
7.2 KB
|
/usr/share/pyshared/qiime/group.py
|
text/x-python
|
root:root
|
0o755
|
26.6 KB
|
/usr/share/pyshared/qiime/quality.py
|
text/x-python
|
root:root
|
0o644
|
1.5 KB
|
/usr/share/pyshared/qiime/cluster_quality.py
|
text/x-python
|
root:root
|
0o644
|
1.2 KB
|
/usr/share/pyshared/qiime/principal_coordinates.py
|
text/x-python
|
root:root
|
0o644
|
1.7 KB
|
/usr/share/pyshared/qiime/plot_rank_abundance_graph.py
|
text/x-python
|
root:root
|
0o644
|
3.9 KB
|
/usr/share/pyshared/qiime/add_alpha_to_mapping_file.py
|
text/x-python
|
root:root
|
0o755
|
8.2 KB
|
/usr/share/pyshared/qiime/make_otu_heatmap_html.py
|
text/x-python
|
root:root
|
0o644
|
9.8 KB
|
/usr/share/pyshared/qiime/workflow/
|
|
root:root
|
0o755
|
|
/usr/share/pyshared/qiime/workflow/util.py
|
text/x-python
|
root:root
|
0o755
|
5.5 KB
|
/usr/share/pyshared/qiime/workflow/core_diversity_analyses.py
|
text/x-python
|
root:root
|
0o644
|
21.1 KB
|
/usr/share/pyshared/qiime/workflow/downstream.py
|
text/x-python
|
root:root
|
0o644
|
29.2 KB
|
/usr/share/pyshared/qiime/workflow/__init__.py
|
text/x-python
|
root:root
|
0o644
|
639 bytes
|
/usr/share/pyshared/qiime/workflow/pick_open_reference_otus.py
|
text/x-python
|
root:root
|
0o644
|
40.9 KB
|
/usr/share/pyshared/qiime/workflow/ampliconnoise.py
|
text/x-python
|
root:root
|
0o755
|
9.5 KB
|
/usr/share/pyshared/qiime/workflow/upstream.py
|
text/x-python
|
root:root
|
0o644
|
17.2 KB
|
/usr/share/pyshared/qiime/longitudinal_otu_category_significance.py
|
text/x-python
|
root:root
|
0o644
|
4.3 KB
|
/usr/share/doc/qiime/changelog.Debian.gz
|
application/gzip
|
root:root
|
0o644
|
1.7 KB
|
/usr/share/pyshared/qiime/shared_phylotypes.py
|
text/x-python
|
root:root
|
0o644
|
2.9 KB
|
/usr/share/pyshared/qiime/compare_taxa_summaries.py
|
text/x-python
|
root:root
|
0o755
|
24.8 KB
|
/usr/share/pyshared/qiime/hamming.py
|
text/x-python
|
root:root
|
0o644
|
4.9 KB
|
/usr/share/pyshared/qiime/parallel/
|
|
root:root
|
0o755
|
|
/usr/share/pyshared/qiime/parallel/util.py
|
text/x-python
|
root:root
|
0o644
|
21.5 KB
|
/usr/share/pyshared/qiime/parallel/multiple_rarefactions.py
|
text/x-python
|
root:root
|
0o644
|
3.0 KB
|
/usr/share/pyshared/qiime/parallel/align_seqs.py
|
text/x-python
|
root:root
|
0o644
|
4.9 KB
|
/usr/share/pyshared/qiime/parallel/assign_taxonomy.py
|
text/x-python
|
root:root
|
0o644
|
6.2 KB
|
/usr/share/pyshared/qiime/parallel/identify_chimeric_seqs.py
|
text/x-python
|
root:root
|
0o755
|
9.0 KB
|
/usr/share/pyshared/qiime/parallel/map_reads_to_reference.py
|
text/x-python
|
root:root
|
0o644
|
10.4 KB
|
/usr/share/pyshared/qiime/parallel/merge_otus.py
|
text/x-python
|
root:root
|
0o644
|
4.7 KB
|
/usr/share/pyshared/qiime/parallel/beta_diversity.py
|
text/x-python
|
root:root
|
0o644
|
9.6 KB
|
/usr/share/pyshared/qiime/parallel/poller.py
|
text/x-python
|
root:root
|
0o755
|
6.8 KB
|
/usr/share/pyshared/qiime/parallel/__init__.py
|
text/x-python
|
root:root
|
0o644
|
619 bytes
|
/usr/share/pyshared/qiime/parallel/pick_otus.py
|
text/x-python
|
root:root
|
0o644
|
22.1 KB
|
/usr/share/pyshared/qiime/parallel/blast.py
|
text/x-python
|
root:root
|
0o755
|
4.0 KB
|
/usr/share/pyshared/qiime/beta_diversity.py
|
text/x-python
|
root:root
|
0o644
|
16.9 KB
|
/usr/share/pyshared/qiime/parallel/alpha_diversity.py
|
text/x-python
|
root:root
|
0o644
|
2.4 KB
|
/usr/share/pyshared/qiime/extract_barcodes.py
|
text/x-python
|
root:root
|
0o644
|
23.3 KB
|
/usr/share/pyshared/qiime/golay.py
|
text/x-python
|
root:root
|
0o644
|
7.6 KB
|
/usr/share/pyshared/qiime/make_fastq.py
|
text/x-python
|
root:root
|
0o644
|
3.2 KB
|
/usr/share/pyshared/qiime/distance_matrix_from_mapping.py
|
text/x-python
|
root:root
|
0o644
|
5.5 KB
|
/usr/share/pyshared/qiime/simsam.py
|
text/x-python
|
root:root
|
0o755
|
10.9 KB
|
/usr/share/pyshared/qiime/align_seqs.py
|
text/x-python
|
root:root
|
0o644
|
10.9 KB
|
/usr/share/pyshared/qiime/assign_taxonomy.py
|
text/x-python
|
root:root
|
0o644
|
43.5 KB
|
/usr/share/pyshared/qiime/identify_chimeric_seqs.py
|
text/x-python
|
root:root
|
0o755
|
45.3 KB
|
/usr/share/pyshared/qiime/core_microbiome.py
|
text/x-python
|
root:root
|
0o644
|
3.3 KB
|
/usr/share/pyshared/qiime/make_phylogeny.py
|
text/x-python
|
root:root
|
0o644
|
8.6 KB
|
/usr/share/pyshared/qiime/make_library_id_lists.py
|
text/x-python
|
root:root
|
0o644
|
1.3 KB
|
/usr/share/pyshared/qiime/truncate_reverse_primer.py
|
text/x-python
|
root:root
|
0o755
|
6.8 KB
|
/usr/share/pyshared/qiime/split_libraries_fastq.py
|
text/x-python
|
root:root
|
0o644
|
16.2 KB
|
/usr/share/pyshared/qiime/map_reads_to_reference.py
|
text/x-python
|
root:root
|
0o644
|
14.6 KB
|
/usr/share/pyshared/qiime/pick_rep_set.py
|
text/x-python
|
root:root
|
0o644
|
13.3 KB
|
/usr/share/pyshared/qiime/relatedness_library.py
|
text/x-python
|
root:root
|
0o644
|
6.6 KB
|
/usr/share/pyshared/qiime/supervised_learning.py
|
text/x-python
|
root:root
|
0o644
|
9.2 KB
|
/usr/share/pyshared/qiime/join_paired_ends.py
|
text/x-python
|
root:root
|
0o644
|
3.1 KB
|
/usr/share/pyshared/qiime/barcode.py
|
text/x-python
|
root:root
|
0o644
|
3.6 KB
|
/usr/share/pyshared/qiime/hierarchical_cluster.py
|
text/x-python
|
root:root
|
0o644
|
2.6 KB
|
/usr/share/pyshared/qiime/compare_alpha_diversity.py
|
text/x-python
|
root:root
|
0o644
|
11.6 KB
|
/usr/share/pyshared/qiime/make_otu_network.py
|
text/x-python
|
root:root
|
0o644
|
56.7 KB
|
/usr/share/pyshared/qiime/format.py
|
text/x-python
|
root:root
|
0o755
|
40.7 KB
|
/usr/share/pyshared/qiime/make_bipartite_network.py
|
text/x-python
|
root:root
|
0o644
|
10.6 KB
|
/usr/share/pyshared/qiime/make_3d_plots.py
|
text/x-python
|
root:root
|
0o644
|
57.9 KB
|
/usr/share/pyshared/qiime/denoiser/
|
|
root:root
|
0o755
|
|
/usr/share/pyshared/qiime/denoiser/denoise_worker.py
|
text/x-python
|
root:root
|
0o644
|
5.5 KB
|
/usr/share/pyshared/qiime/denoiser/utils.py
|
text/x-python
|
root:root
|
0o644
|
13.9 KB
|
/usr/share/pyshared/qiime/denoiser/preprocess.py
|
text/x-python
|
root:root
|
0o644
|
11.3 KB
|
/usr/share/pyshared/qiime/denoiser/denoise_postprocess.py
|
text/x-python
|
root:root
|
0o644
|
3.4 KB
|
/usr/share/pyshared/qiime/denoiser/__init__.py
|
text/x-python
|
root:root
|
0o644
|
461 bytes
|
/usr/share/pyshared/qiime/denoiser/cluster_utils.py
|
text/x-python
|
root:root
|
0o644
|
9.8 KB
|
/usr/share/pyshared/qiime/denoiser/make_cluster_jobs.py
|
text/x-python
|
root:root
|
0o755
|
3.2 KB
|
/usr/share/pyshared/qiime/denoiser/flowgram_filter.py
|
text/x-python
|
root:root
|
0o644
|
7.8 KB
|
/usr/share/pyshared/qiime/denoiser/flowgram_clustering.py
|
text/x-python
|
root:root
|
0o644
|
28.5 KB
|
/usr/share/pyshared/qiime/__init__.py
|
text/x-python
|
root:root
|
0o644
|
1.0 KB
|
/usr/share/pyshared/qiime/split_libraries.py
|
text/x-python
|
root:root
|
0o644
|
59.3 KB
|
/usr/share/pyshared/qiime/detrend.py
|
text/x-c++
|
root:root
|
0o644
|
5.9 KB
|
/usr/share/pyshared/qiime/make_bootstrapped_tree.py
|
text/x-python
|
root:root
|
0o644
|
1.3 KB
|
/usr/share/pyshared/qiime/merge_mapping_files.py
|
text/x-python
|
root:root
|
0o755
|
3.0 KB
|
/usr/share/pyshared/qiime/clean_raxml_parsimony_tree.py
|
text/x-python
|
root:root
|
0o644
|
2.7 KB
|
/usr/share/pyshared/qiime/pick_otus.py
|
text/x-python
|
root:root
|
0o644
|
65.0 KB
|
/usr/share/pyshared/qiime/plot_taxa_summary.py
|
text/x-python
|
root:root
|
0o644
|
44.6 KB
|
/usr/share/pyshared/qiime/make_otu_table.py
|
text/x-python
|
root:root
|
0o644
|
2.5 KB
|
/usr/share/pyshared/qiime/make_distance_boxplots.py
|
text/x-python
|
root:root
|
0o755
|
12.1 KB
|
/usr/share/pyshared/qiime/filter.py
|
text/x-python
|
root:root
|
0o644
|
24.8 KB
|
/usr/share/pyshared/qiime/tree_compare.py
|
text/x-python
|
root:root
|
0o644
|
8.8 KB
|
/usr/share/pyshared/qiime/collate_alpha.py
|
text/x-python
|
root:root
|
0o644
|
2.3 KB
|
/usr/share/pyshared/qiime/test.py
|
text/x-python
|
root:root
|
0o644
|
111.9 KB
|
/usr/share/pyshared/qiime/estimate_observation_richness.py
|
text/x-python
|
root:root
|
0o755
|
20.1 KB
|
/usr/share/pyshared/qiime/rarefaction.py
|
text/x-python
|
root:root
|
0o644
|
7.7 KB
|
/usr/share/pyshared/qiime/biplots.py
|
text/x-python
|
root:root
|
0o644
|
5.3 KB
|
/usr/share/pyshared/qiime/process_sff.py
|
text/x-python
|
root:root
|
0o644
|
9.4 KB
|
/usr/share/pyshared/qiime/make_2d_plots.py
|
text/x-python
|
root:root
|
0o644
|
22.1 KB
|
/usr/share/pyshared/qiime/denoise_wrapper.py
|
text/x-python
|
root:root
|
0o644
|
2.3 KB
|
/usr/share/pyshared/qiime/filter_alignment.py
|
text/x-python
|
root:root
|
0o755
|
7.0 KB
|
/usr/share/pyshared/qiime/submit_to_mgrast.py
|
text/x-python
|
root:root
|
0o644
|
6.7 KB
|
/usr/share/pyshared/qiime/parse.py
|
text/x-python
|
root:root
|
0o644
|
34.9 KB
|
/usr/share/pyshared/qiime/summarize_taxa.py
|
text/x-python
|
root:root
|
0o644
|
5.3 KB
|
/usr/share/pyshared/qiime/make_rarefaction_plots.py
|
text/x-python
|
root:root
|
0o644
|
50.9 KB
|
/usr/share/pyshared/qiime/truncate_fasta_qual_files.py
|
text/x-python
|
root:root
|
0o755
|
6.2 KB
|
/usr/share/pyshared/qiime/filter_otus_by_sample.py
|
text/x-python
|
root:root
|
0o644
|
4.1 KB
|
/usr/share/pyshared/qiime/exclude_seqs_by_blast.py
|
text/x-python
|
root:root
|
0o644
|
11.7 KB
|
/usr/share/pyshared/qiime/demultiplex_fasta.py
|
text/x-python
|
root:root
|
0o755
|
33.5 KB
|
/usr/share/pyshared/qiime/otu_significance.py
|
text/x-python
|
root:root
|
0o644
|
15.8 KB
|
/usr/share/pyshared/qiime/stats.py
|
text/x-python
|
root:root
|
0o644
|
82.9 KB
|
/usr/share/pyshared/qiime/quality_scores_plot.py
|
text/x-python
|
root:root
|
0o755
|
7.0 KB
|
/usr/share/pyshared/qiime/alpha_diversity.py
|
text/x-python
|
root:root
|
0o644
|
15.2 KB
|
/usr/share/pyshared/qiime/check_id_map.py
|
text/x-python
|
root:root
|
0o644
|
37.7 KB
|
/usr/share/pyshared/qiime/remote.py
|
text/x-python
|
root:root
|
0o755
|
12.3 KB
|
/usr/share/pyshared/qiime/convert_fastaqual_fastq.py
|
text/x-python
|
root:root
|
0o644
|
11.4 KB
|
/usr/share/pyshared/qiime/pycogent_backports/
|
|
root:root
|
0o755
|
|
/usr/share/pyshared/qiime/pycogent_backports/tax2tree.py
|
text/x-python
|
root:root
|
0o644
|
2.8 KB
|
/usr/share/pyshared/qiime/pycogent_backports/bwa.py
|
text/x-python
|
root:root
|
0o644
|
25.5 KB
|
/usr/share/pyshared/qiime/pycogent_backports/blat.py
|
text/x-python
|
root:root
|
0o644
|
16.2 KB
|
/usr/share/pyshared/qiime/pycogent_backports/distribution_plots.py
|
text/x-python
|
root:root
|
0o755
|
28.2 KB
|
/usr/share/pyshared/qiime/pycogent_backports/mothur.py
|
text/x-python
|
root:root
|
0o644
|
19.4 KB
|
/usr/share/pyshared/qiime/pycogent_backports/usearch.py
|
text/x-python
|
root:root
|
0o755
|
94.8 KB
|
/usr/share/pyshared/qiime/pycogent_backports/rdp_classifier.py
|
text/x-python
|
root:root
|
0o644
|
22.3 KB
|
/usr/share/pyshared/qiime/pycogent_backports/__init__.py
|
text/x-python
|
root:root
|
0o644
|
509 bytes
|
/usr/share/pyshared/qiime/pycogent_backports/test.py
|
text/x-python
|
root:root
|
0o644
|
71.4 KB
|
/usr/share/pyshared/qiime/pycogent_backports/seqprep.py
|
text/x-python
|
root:root
|
0o644
|
14.6 KB
|
/usr/share/pyshared/qiime/pycogent_backports/fastq_join.py
|
text/x-python
|
root:root
|
0o644
|
8.4 KB
|
/usr/share/pyshared/qiime/pycogent_backports/fastq.py
|
text/x-c++
|
root:root
|
0o644
|
324 bytes
|
/usr/share/pyshared/qiime/pycogent_backports/alpha_diversity.py
|
text/x-python
|
root:root
|
0o644
|
38.9 KB
|
/usr/share/pyshared/qiime/pycogent_backports/uclust.py
|
text/x-python
|
root:root
|
0o755
|
21.8 KB
|
/usr/share/pyshared/qiime/colors.py
|
text/x-python
|
root:root
|
0o644
|
23.1 KB
|
/usr/share/pyshared/qiime/insert_seqs_into_tree.py
|
text/x-python
|
root:root
|
0o644
|
1.6 KB
|
/usr/share/pyshared/qiime/compare_distance_matrices.py
|
text/x-python
|
root:root
|
0o755
|
11.4 KB
|
/usr/share/pyshared/qiime/plot_semivariogram.py
|
text/x-python
|
root:root
|
0o644
|
5.4 KB
|
/usr/share/pyshared/qiime/nmds.py
|
text/x-python
|
root:root
|
0o644
|
1.4 KB
|
/usr/share/pyshared/qiime/categorized_dist_scatterplot.py
|
text/x-python
|
root:root
|
0o755
|
2.4 KB
|
/usr/share/pyshared/qiime/make_per_library_sff.py
|
text/x-python
|
root:root
|
0o644
|
3.5 KB
|
/usr/share/pyshared/qiime/make_distance_histograms.py
|
text/x-python
|
root:root
|
0o644
|
31.1 KB
|
/usr/share/pyshared/qiime/split.py
|
text/x-python
|
root:root
|
0o644
|
5.1 KB
|
/usr/share/doc/
|
|
root:root
|
0o755
|
|
/usr/share/doc/qiime/
|
|
root:root
|
0o755
|
|
/usr/share/doc/qiime/README
|
text/plain
|
root:root
|
0o644
|
2.9 KB
|
/usr/share/doc/qiime/README.Debian
|
text/plain
|
root:root
|
0o644
|
2.2 KB
|
/usr/share/doc/qiime/copyright
|
text/plain
|
root:root
|
0o644
|
1.6 KB
|
/usr/share/qiime/support_files/js/jquery.js
|
|
root:root
|
0o777
|
|