bedtools 2.17.0-1 / usr

This file is indexed.

/usr/ is in bedtools 2.17.0-1.

This file is owned by root:root, with mode 0o755.

File Mime Type Owner Mode Size
..
/usr/share/ root:root 0o755
/usr/share/bedtools/ root:root 0o755
/usr/share/bedtools/test/ root:root 0o755
/usr/share/bedtools/test/closest/ root:root 0o755
/usr/share/bedtools/test/closest/test-closest.sh text/plain root:root 0o644 2.1 KB
/usr/share/bedtools/test/closest/b-one-bp-closer.bed text/plain root:root 0o644 11 bytes
/usr/share/bedtools/test/closest/a.names.bed text/plain root:root 0o644 35 bytes
/usr/share/bedtools/test/closest/a.bed text/plain root:root 0o644 11 bytes
/usr/share/bedtools/test/closest/b.names.bed text/plain root:root 0o644 36 bytes
/usr/share/bedtools/test/closest/b.bed text/plain root:root 0o644 11 bytes
/usr/share/bedtools/test/slop/ root:root 0o755
/usr/share/bedtools/test/slop/a.bed text/plain root:root 0o644 41 bytes
/usr/share/bedtools/test/slop/tiny.genome text/plain root:root 0o644 10 bytes
/usr/share/bedtools/test/slop/test-slop.sh text/plain root:root 0o644 3.5 KB
/usr/share/bedtools/test/subtract/ root:root 0o755
/usr/share/bedtools/test/subtract/a.bed text/plain root:root 0o644 36 bytes
/usr/share/bedtools/test/subtract/test-subtract.sh text/plain root:root 0o644 2.5 KB
/usr/share/bedtools/test/subtract/b.bed text/plain root:root 0o644 36 bytes
/usr/share/bedtools/test/genomecov/ root:root 0o755
/usr/share/bedtools/test/genomecov/test-genomecov.sh text/plain root:root 0o644 3.3 KB
/usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed text/plain root:root 0o644 63 bytes
/usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed text/plain root:root 0o644 63 bytes
/usr/share/bedtools/test/genomecov/sam-w-del.sam text/plain root:root 0o644 142 bytes
/usr/share/bedtools/test/genomecov/three_blocks_match.bed text/plain root:root 0o644 60 bytes
/usr/share/bedtools/test/genomecov/one_block.sam text/plain root:root 0o644 156 bytes
/usr/share/bedtools/test/genomecov/two_blocks.sam text/plain root:root 0o644 162 bytes
/usr/share/bedtools/test/genomecov/three_blocks.sam text/plain root:root 0o644 171 bytes
/usr/share/bedtools/test/jaccard/ root:root 0o755
/usr/share/bedtools/test/jaccard/a.bed text/plain root:root 0o644 38 bytes
/usr/share/bedtools/test/jaccard/c.bed text/plain root:root 0o644 18 bytes
/usr/share/bedtools/test/jaccard/b.bed text/plain root:root 0o644 77 bytes
/usr/share/bedtools/test/jaccard/test-jaccard.sh text/plain root:root 0o644 825 bytes
/usr/share/bedtools/test/jaccard/d.bed text/plain root:root 0o644 11 bytes
/usr/share/bedtools/test/cluster/ root:root 0o755
/usr/share/bedtools/test/cluster/in.bed text/plain root:root 0o644 264 bytes
/usr/share/bedtools/test/cluster/test-cluster.sh text/plain root:root 0o644 1.4 KB
/usr/share/bedtools/test/general/ root:root 0o755
/usr/share/bedtools/test/general/test-general.sh text/plain root:root 0o644 1.9 KB
/usr/share/bedtools/test/coverage/ root:root 0o755
/usr/share/bedtools/test/coverage/one_block.bam.bai application/octet-stream root:root 0o644 96 bytes
/usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed text/plain root:root 0o644 63 bytes
/usr/share/bedtools/test/coverage/three_blocks_nomatch.bed text/plain root:root 0o644 63 bytes
/usr/share/bedtools/test/coverage/sam-w-del.sam text/plain root:root 0o644 142 bytes
/usr/share/bedtools/test/coverage/three_blocks_match.bed text/plain root:root 0o644 60 bytes
/usr/share/bedtools/test/coverage/sam-w-del.bam.bai application/octet-stream root:root 0o644 96 bytes
/usr/share/bedtools/test/coverage/one_block.sam text/plain root:root 0o644 156 bytes
/usr/share/bedtools/test/coverage/two_blocks.sam text/plain root:root 0o644 162 bytes
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/usr/share/bedtools/test/coverage/test-coverage.sh text/plain root:root 0o644 988 bytes
/usr/share/bedtools/test/coverage/two_blocks.bam.bai application/octet-stream root:root 0o644 96 bytes
/usr/share/bedtools/test/coverage/three_blocks.sam text/plain root:root 0o644 171 bytes
/usr/share/bedtools/test/coverage/three_blocks.bam.bai application/octet-stream root:root 0o644 96 bytes
/usr/share/bedtools/test/getfasta/ root:root 0o755
/usr/share/bedtools/test/getfasta/blocks.bed text/plain root:root 0o644 117 bytes
/usr/share/bedtools/test/getfasta/t.fa text/plain root:root 0o644 61 bytes
/usr/share/bedtools/test/getfasta/test-getfasta.sh text/plain root:root 0o644 1.2 KB
/usr/share/bedtools/test/getfasta/t.fa.fai text/plain root:root 0o644 16 bytes
/usr/share/bedtools/test/getfasta/t.bed application/x-empty root:root 0o644 0 bytes
/usr/share/bedtools/test/merge/ root:root 0o755
/usr/share/bedtools/test/merge/a.names.bed text/plain root:root 0o644 57 bytes
/usr/share/bedtools/test/merge/a.full.bed text/plain root:root 0o644 147 bytes
/usr/share/bedtools/test/merge/a.bed text/plain root:root 0o644 46 bytes
/usr/share/bedtools/test/merge/test-merge.sh text/plain root:root 0o644 3.6 KB
/usr/share/bedtools/test/flank/ root:root 0o755
/usr/share/bedtools/test/flank/a.bed text/plain root:root 0o644 41 bytes
/usr/share/bedtools/test/flank/test-flank.sh text/plain root:root 0o644 3.8 KB
/usr/share/bedtools/test/flank/tiny.genome text/plain root:root 0o644 10 bytes
/usr/share/bedtools/test/groupBy/ root:root 0o755
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/usr/share/bedtools/test/groupBy/test-groupby.sh text/plain root:root 0o644 885 bytes
/usr/share/bedtools/test/bamtobed/ root:root 0o755
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/usr/share/bedtools/test/bamtobed/one_block.sam text/plain root:root 0o644 162 bytes
/usr/share/bedtools/test/bamtobed/two_blocks.sam text/plain root:root 0o644 167 bytes
/usr/share/bedtools/test/bamtobed/three_blocks.sam text/plain root:root 0o644 176 bytes
/usr/share/bedtools/test/map/ root:root 0o755
/usr/share/bedtools/test/map/values2.bed text/plain root:root 0o644 186 bytes
/usr/share/bedtools/test/map/values.bed text/plain root:root 0o644 147 bytes
/usr/share/bedtools/test/map/values3.bed text/plain root:root 0o644 227 bytes
/usr/share/bedtools/test/map/test-map.sh text/plain root:root 0o644 2.7 KB
/usr/share/bedtools/test/map/ivls.bed text/plain root:root 0o644 72 bytes
/usr/share/bedtools/test/expand/ root:root 0o755
/usr/share/bedtools/test/expand/expand.txt text/plain root:root 0o644 52 bytes
/usr/share/bedtools/test/expand/test-expand.sh text/plain root:root 0o644 1.2 KB
/usr/share/bedtools/test/test.sh text/plain root:root 0o644 1.2 KB
/usr/share/bedtools/test/intersect/ root:root 0o755
/usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed text/plain root:root 0o644 63 bytes
/usr/share/bedtools/test/intersect/three_blocks_nomatch.bed text/plain root:root 0o644 63 bytes
/usr/share/bedtools/test/intersect/a.bed text/plain root:root 0o644 38 bytes
/usr/share/bedtools/test/intersect/three_blocks_match.bed text/plain root:root 0o644 60 bytes
/usr/share/bedtools/test/intersect/one_block.sam text/plain root:root 0o644 162 bytes
/usr/share/bedtools/test/intersect/mapped_and_unmapped.sam text/plain root:root 0o644 255 bytes
/usr/share/bedtools/test/intersect/c.bed text/plain root:root 0o644 18 bytes
/usr/share/bedtools/test/intersect/b.bed text/plain root:root 0o644 76 bytes
/usr/share/bedtools/test/intersect/two_blocks.sam text/plain root:root 0o644 167 bytes
/usr/share/bedtools/test/intersect/three_blocks.sam text/plain root:root 0o644 176 bytes
/usr/share/bedtools/test/intersect/test-intersect.sh text/plain root:root 0o644 9.9 KB
/usr/share/bedtools/test/multicov/ root:root 0o755
/usr/share/bedtools/test/multicov/one_block.bam.bai application/octet-stream root:root 0o644 96 bytes
/usr/share/bedtools/test/multicov/one_block.sam text/plain root:root 0o644 162 bytes
/usr/share/bedtools/test/multicov/test-multicov.sh text/plain root:root 0o644 3.7 KB
/usr/share/bedtools/test/multicov/multicov.bed text/plain root:root 0o644 72 bytes
/usr/share/bedtools/test/multicov/two_blocks.sam text/plain root:root 0o644 167 bytes
/usr/share/bedtools/test/multicov/two_blocks.bam.bai application/octet-stream root:root 0o644 96 bytes
/usr/share/bedtools/test/bed12tobed6/ root:root 0o755
/usr/share/bedtools/test/bed12tobed6/two_blocks.bed text/plain root:root 0o644 52 bytes
/usr/share/bedtools/test/bed12tobed6/three_blocks.bed text/plain root:root 0o644 60 bytes
/usr/bin/bedpeToBam text/x-shellscript root:root 0o755 43 bytes
/usr/share/bedtools/test/bed12tobed6/bed6.bed text/plain root:root 0o644 18 bytes
/usr/share/bedtools/test/bed12tobed6/one_blocks.bed text/plain root:root 0o644 46 bytes
/usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh text/plain root:root 0o644 1.9 KB
/usr/share/bedtools/genomes/ root:root 0o755
/usr/share/bedtools/genomes/human.hg19.genome text/plain root:root 0o755 1.9 KB
/usr/share/bedtools/genomes/mouse.mm9.genome text/plain root:root 0o755 585 bytes
/usr/share/bedtools/genomes/mouse.mm8.genome text/plain root:root 0o755 565 bytes
/usr/share/bedtools/genomes/human.hg18.genome text/plain root:root 0o755 856 bytes
/usr/share/doc/ root:root 0o755
/usr/share/doc/bedtools/ root:root 0o755
/usr/share/doc/bedtools/copyright text/plain root:root 0o644 5.3 KB
/usr/share/doc/bedtools/README.rst text/plain root:root 0o644 1.5 KB
/usr/bin/ root:root 0o755
/usr/bin/nucBed text/x-shellscript root:root 0o755 36 bytes
/usr/bin/clusterBed text/x-shellscript root:root 0o755 40 bytes
/usr/bin/bamToFastq text/x-shellscript root:root 0o755 43 bytes
/usr/bin/maskFastaFromBed text/x-shellscript root:root 0o755 42 bytes
/usr/bin/unionBedGraphs text/x-shellscript root:root 0o755 42 bytes
/usr/bin/multiIntersectBed text/x-shellscript root:root 0o755 43 bytes
/usr/bin/slopBed text/x-shellscript root:root 0o755 37 bytes
/usr/bin/intersectBed text/x-shellscript root:root 0o755 42 bytes
/usr/bin/linksBed text/x-shellscript root:root 0o755 38 bytes
/usr/bin/mapBed text/x-shellscript root:root 0o755 36 bytes
/usr/bin/bedToIgv text/x-shellscript root:root 0o755 36 bytes
/usr/bin/complementBed text/x-shellscript root:root 0o755 43 bytes
/usr/bin/getOverlap text/x-shellscript root:root 0o755 40 bytes
/usr/bin/coverageBed text/x-shellscript root:root 0o755 41 bytes
/usr/bin/annotateBed text/x-shellscript root:root 0o755 41 bytes
/usr/bin/closestBed text/x-shellscript root:root 0o755 40 bytes
/usr/bin/mergeBed text/x-shellscript root:root 0o755 38 bytes
/usr/bin/bed12ToBed6 text/x-shellscript root:root 0o755 44 bytes
/usr/bin/flankBed text/x-shellscript root:root 0o755 38 bytes
/usr/bin/multiBamCov text/x-shellscript root:root 0o755 41 bytes
/usr/bin/windowBed text/x-shellscript root:root 0o755 39 bytes
/usr/bin/bedtools application/x-executable root:root 0o755 1.3 MB
/usr/bin/subtractBed text/x-shellscript root:root 0o755 41 bytes
/usr/bin/shuffleBed text/x-shellscript root:root 0o755 40 bytes
/usr/bin/bedToBam text/x-shellscript root:root 0o755 41 bytes
/usr/bin/randomBed text/x-shellscript root:root 0o755 39 bytes
/usr/bin/tagBam text/x-shellscript root:root 0o755 36 bytes
/usr/bin/sortBed text/x-shellscript root:root 0o755 37 bytes
/usr/bin/fastaFromBed text/x-shellscript root:root 0o755 41 bytes
/usr/bin/pairToPair text/x-shellscript root:root 0o755 43 bytes
/usr/bin/genomeCoverageBed text/x-shellscript root:root 0o755 42 bytes
/usr/bin/bamToBed text/x-shellscript root:root 0o755 41 bytes
/usr/bin/pairToBed text/x-shellscript root:root 0o755 42 bytes
/usr/bin/windowMaker text/x-shellscript root:root 0o755 44 bytes
/usr/bin/expandCols text/x-shellscript root:root 0o755 39 bytes

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