This package is 2.1 MB.
It is available at http://ftp.debian.org/debian/pool/main/r/r-bioc-variantannotation/r-bioc-variantannotation_1.20.2-1+b1_amd64.deb
.
View its full control file here:
debian/control.
BioConductor annotation of genetic variants
This package depends on:
r-base-core (>= 3.3.3-1), r-api-3, r-bioc-biocgenerics (>= 0.15.3), r-bioc-genomeinfodb (>= 1.7.1), r-bioc-genomicranges (>= 1.19.47), r-bioc-summarizedexperiment (>= 0.3.1), r-bioc-rsamtools (>= 1.23.10), r-cran-dbi, r-bioc-biobase, r-bioc-s4vectors (>= 0.9.47), r-bioc-iranges (>= 2.3.25), r-bioc-xvector (>= 0.5.6), r-bioc-biostrings (>= 2.33.5), r-bioc-annotationdbi (>= 1.27.9), r-bioc-bsgenome (>= 1.37.6), r-bioc-rtracklayer (>= 1.25.16), r-bioc-genomicfeatures (>= 1.19.17), libc6 (>= 2.15), zlib1g (>= 1:1.2.3.3).
This package does not recommend any other package.
This package suggests:
r-cran-runit, r-bioc-annotationhub, r-bioc-snpstats, r-cran-ggplot2.
This package does not conflict with any other package.
r-bioc-variantannotation 1.20.2-1+b1 is in debian - stretch / main. This package's architecture is: amd64.
| File | Mime Type | Owner | Mode | Size |
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/usr/
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/usr/lib/
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/usr/lib/R/
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/usr/lib/R/site-library/
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/usr/lib/R/site-library/VariantAnnotation/
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/usr/lib/R/site-library/VariantAnnotation/CITATION
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/usr/lib/R/site-library/VariantAnnotation/DESCRIPTION
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/usr/lib/R/site-library/VariantAnnotation/doc/
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/usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.pdf
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/usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.R
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/usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.Rnw
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/usr/lib/R/site-library/VariantAnnotation/doc/index.html
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/usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.pdf
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application/pdf | root:root | 0o644 | 170.8 KB |
/usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.R
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/usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.Rnw
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/usr/lib/R/site-library/VariantAnnotation/extdata/
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/usr/lib/R/site-library/VariantAnnotation/extdata/chr22.vcf.gz
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/usr/lib/R/site-library/VariantAnnotation/extdata/chr22.vcf.gz.tbi
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/usr/lib/R/site-library/VariantAnnotation/extdata/chr7-sub.vcf.gz
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/usr/lib/R/site-library/VariantAnnotation/extdata/chr7-sub.vcf.gz.tbi
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/usr/lib/R/site-library/VariantAnnotation/extdata/ex2.vcf
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/usr/lib/R/site-library/VariantAnnotation/extdata/gl_chr1.vcf
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/usr/lib/R/site-library/VariantAnnotation/extdata/h1187-10k.vcf.gz
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/usr/lib/R/site-library/VariantAnnotation/extdata/h1187-10k.vcf.gz.tbi
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/usr/lib/R/site-library/VariantAnnotation/extdata/hapmap_exome_chr22.vcf.gz
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/usr/lib/R/site-library/VariantAnnotation/extdata/hapmap_exome_chr22.vcf.gz.tbi
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/usr/lib/R/site-library/VariantAnnotation/extdata/structural.vcf
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/usr/lib/R/site-library/VariantAnnotation/help/
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/usr/lib/R/site-library/VariantAnnotation/help/aliases.rds
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/usr/lib/R/site-library/VariantAnnotation/help/AnIndex
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/usr/lib/R/site-library/VariantAnnotation/help/paths.rds
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/usr/lib/R/site-library/VariantAnnotation/help/VariantAnnotation.rdb
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/usr/lib/R/site-library/VariantAnnotation/help/VariantAnnotation.rdx
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/usr/lib/R/site-library/VariantAnnotation/html/
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/usr/lib/R/site-library/VariantAnnotation/html/00Index.html
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/usr/lib/R/site-library/VariantAnnotation/html/R.css
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/usr/lib/R/site-library/VariantAnnotation/INDEX
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/usr/lib/R/site-library/VariantAnnotation/libs/
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/usr/lib/R/site-library/VariantAnnotation/libs/VariantAnnotation.so
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/usr/lib/R/site-library/VariantAnnotation/Meta/
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/usr/lib/R/site-library/VariantAnnotation/Meta/vignette.rds
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/usr/lib/R/site-library/VariantAnnotation/NAMESPACE
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/usr/lib/R/site-library/VariantAnnotation/NEWS
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/usr/lib/R/site-library/VariantAnnotation/R/
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/usr/lib/R/site-library/VariantAnnotation/R/VariantAnnotation.rdb
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/usr/lib/R/site-library/VariantAnnotation/scripts/
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/usr/lib/R/site-library/VariantAnnotation/scripts/test_Rplinkseq.R
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/usr/lib/R/site-library/VariantAnnotation/unitTests/
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/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/
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/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/banded_gvcf.vcf
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/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/expand.vcf
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/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/fewer-FORMAT-than-GENO.vcf
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/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/FORMAT_header_no_SAMPLEs.vcf
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/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/missing-FORMAT-metadata-elt.vcf
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/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/mixedStructural.vcf
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/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/multiple_INFO_fields.vcf
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/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/negative_FORMAT_Number.vcf
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/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_FORMAT_column.vcf
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/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_GENO_row.vcf
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/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_INFO_header.vcf
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/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/unspecified_INFO_FORMAT_fields.vcf
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/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/VarScan_header.vcf
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/usr/lib/R/site-library/VariantAnnotation/unitTests/test_expand-methods.R
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/usr/lib/R/site-library/VariantAnnotation/unitTests/test_filterVcf.R
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/usr/lib/R/site-library/VariantAnnotation/unitTests/test_genotypeToSnpMatrix.R
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/usr/lib/R/site-library/VariantAnnotation/unitTests/test_isSNV.R
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/usr/lib/R/site-library/VariantAnnotation/unitTests/test_readVcf-methods.R
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/usr/lib/R/site-library/VariantAnnotation/unitTests/test_ScanVcfParam-class.R
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/usr/lib/R/site-library/VariantAnnotation/unitTests/test_scanVcf.R
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/usr/lib/R/site-library/VariantAnnotation/unitTests/test_snpSummary.R
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/usr/lib/R/site-library/VariantAnnotation/unitTests/test_summarizeVariants-methods.R
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/usr/lib/R/site-library/VariantAnnotation/unitTests/test_VCF-class.R
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/usr/lib/R/site-library/VariantAnnotation/unitTests/test_VRanges-class.R
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/usr/lib/R/site-library/VariantAnnotation/unitTests/test_writeVcf-methods.R
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/usr/share/
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/usr/share/doc/
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/usr/share/doc/r-bioc-variantannotation/
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/usr/share/doc/r-bioc-variantannotation/changelog.Debian.amd64.gz
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/usr/share/doc/r-bioc-variantannotation/changelog.Debian.gz
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/usr/share/doc/r-bioc-variantannotation/copyright
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/usr/share/doc/r-bioc-variantannotation/README.test
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