About

This package is 2.1 MB. It is available at http://ftp.debian.org/debian/pool/main/r/r-bioc-variantannotation/r-bioc-variantannotation_1.20.2-1+b1_amd64.deb .

View its full control file here: debian/control.

Description

BioConductor annotation of genetic variants

Relations

This package depends on: r-base-core (>= 3.3.3-1), r-api-3, r-bioc-biocgenerics (>= 0.15.3), r-bioc-genomeinfodb (>= 1.7.1), r-bioc-genomicranges (>= 1.19.47), r-bioc-summarizedexperiment (>= 0.3.1), r-bioc-rsamtools (>= 1.23.10), r-cran-dbi, r-bioc-biobase, r-bioc-s4vectors (>= 0.9.47), r-bioc-iranges (>= 2.3.25), r-bioc-xvector (>= 0.5.6), r-bioc-biostrings (>= 2.33.5), r-bioc-annotationdbi (>= 1.27.9), r-bioc-bsgenome (>= 1.37.6), r-bioc-rtracklayer (>= 1.25.16), r-bioc-genomicfeatures (>= 1.19.17), libc6 (>= 2.15), zlib1g (>= 1:1.2.3.3).

This package does not recommend any other package.

This package does not conflict with any other package.

Package Contents

This package is indexed.

r-bioc-variantannotation 1.20.2-1+b1 is in debian - stretch / main. This package's architecture is: amd64.

File Mime Type Owner Mode Size
/usr/ root:root 0o755
/usr/lib/ root:root 0o755
/usr/lib/R/ root:root 0o755
/usr/lib/R/site-library/ root:root 0o755
/usr/lib/R/site-library/VariantAnnotation/ root:root 0o755
/usr/lib/R/site-library/VariantAnnotation/CITATION text/plain root:root 0o644 1.7 KB
/usr/lib/R/site-library/VariantAnnotation/DESCRIPTION text/plain root:root 0o644 1.7 KB
/usr/lib/R/site-library/VariantAnnotation/doc/ root:root 0o755
/usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.pdf application/pdf root:root 0o644 120.4 KB
/usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.R text/plain root:root 0o644 3.0 KB
/usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.Rnw text/x-tex root:root 0o644 12.3 KB
/usr/lib/R/site-library/VariantAnnotation/doc/index.html text/html root:root 0o644 1.9 KB
/usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.pdf application/pdf root:root 0o644 170.8 KB
/usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.R text/plain root:root 0o644 9.2 KB
/usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.Rnw text/x-tex root:root 0o644 20.6 KB
/usr/lib/R/site-library/VariantAnnotation/extdata/ root:root 0o755
/usr/lib/R/site-library/VariantAnnotation/extdata/chr22.vcf.gz application/gzip root:root 0o644 548.5 KB
/usr/lib/R/site-library/VariantAnnotation/extdata/chr22.vcf.gz.tbi application/gzip root:root 0o644 655 bytes
/usr/lib/R/site-library/VariantAnnotation/extdata/chr7-sub.vcf.gz application/gzip root:root 0o644 110.5 KB
/usr/lib/R/site-library/VariantAnnotation/extdata/chr7-sub.vcf.gz.tbi application/gzip root:root 0o644 744 bytes
/usr/lib/R/site-library/VariantAnnotation/extdata/ex2.vcf text/plain root:root 0o644 1.8 KB
/usr/lib/R/site-library/VariantAnnotation/extdata/gl_chr1.vcf text/plain root:root 0o644 24.2 KB
/usr/lib/R/site-library/VariantAnnotation/extdata/h1187-10k.vcf.gz application/gzip root:root 0o644 121.9 KB
/usr/lib/R/site-library/VariantAnnotation/extdata/h1187-10k.vcf.gz.tbi application/gzip root:root 0o644 441 bytes
/usr/lib/R/site-library/VariantAnnotation/extdata/hapmap_exome_chr22.vcf.gz application/gzip root:root 0o644 365.6 KB
/usr/lib/R/site-library/VariantAnnotation/extdata/hapmap_exome_chr22.vcf.gz.tbi application/gzip root:root 0o644 4.4 KB
/usr/lib/R/site-library/VariantAnnotation/extdata/structural.vcf text/plain root:root 0o644 3.0 KB
/usr/lib/R/site-library/VariantAnnotation/help/ root:root 0o755
/usr/lib/R/site-library/VariantAnnotation/help/aliases.rds application/gzip root:root 0o644 2.8 KB
/usr/lib/R/site-library/VariantAnnotation/help/AnIndex text/plain root:root 0o644 14.6 KB
/usr/lib/R/site-library/VariantAnnotation/help/paths.rds application/gzip root:root 0o644 408 bytes
/usr/lib/R/site-library/VariantAnnotation/help/VariantAnnotation.rdb application/octet-stream root:root 0o644 178.0 KB
/usr/lib/R/site-library/VariantAnnotation/help/VariantAnnotation.rdx application/gzip root:root 0o644 801 bytes
/usr/lib/R/site-library/VariantAnnotation/html/ root:root 0o755
/usr/lib/R/site-library/VariantAnnotation/html/00Index.html text/html root:root 0o644 34.6 KB
/usr/lib/R/site-library/VariantAnnotation/html/R.css text/plain root:root 0o644 1.3 KB
/usr/lib/R/site-library/VariantAnnotation/INDEX text/plain root:root 0o644 1.5 KB
/usr/lib/R/site-library/VariantAnnotation/libs/ root:root 0o755
/usr/lib/R/site-library/VariantAnnotation/libs/VariantAnnotation.so application/x-sharedlib root:root 0o644 127.7 KB
/usr/lib/R/site-library/VariantAnnotation/Meta/ root:root 0o755
/usr/lib/R/site-library/VariantAnnotation/Meta/hsearch.rds application/gzip root:root 0o644 3.3 KB
/usr/lib/R/site-library/VariantAnnotation/Meta/links.rds application/gzip root:root 0o644 2.8 KB
/usr/lib/R/site-library/VariantAnnotation/Meta/nsInfo.rds application/gzip root:root 0o644 1.5 KB
/usr/lib/R/site-library/VariantAnnotation/Meta/package.rds application/gzip root:root 0o644 1.6 KB
/usr/lib/R/site-library/VariantAnnotation/Meta/Rd.rds application/gzip root:root 0o644 3.2 KB
/usr/lib/R/site-library/VariantAnnotation/Meta/vignette.rds application/gzip root:root 0o644 245 bytes
/usr/lib/R/site-library/VariantAnnotation/NAMESPACE text/plain root:root 0o644 3.2 KB
/usr/lib/R/site-library/VariantAnnotation/NEWS text/plain root:root 0o644 15.2 KB
/usr/lib/R/site-library/VariantAnnotation/R/ root:root 0o755
/usr/lib/R/site-library/VariantAnnotation/R/VariantAnnotation text/plain root:root 0o644 1.0 KB
/usr/lib/R/site-library/VariantAnnotation/R/VariantAnnotation.rdb application/octet-stream root:root 0o644 705.9 KB
/usr/lib/R/site-library/VariantAnnotation/R/VariantAnnotation.rdx application/gzip root:root 0o644 8.7 KB
/usr/lib/R/site-library/VariantAnnotation/scripts/ root:root 0o755
/usr/lib/R/site-library/VariantAnnotation/scripts/test_Rplinkseq.R text/plain root:root 0o644 10.7 KB
/usr/lib/R/site-library/VariantAnnotation/unitTests/ root:root 0o755
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/ root:root 0o755
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/banded_gvcf.vcf text/plain root:root 0o644 3.6 KB
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/expand.vcf text/plain root:root 0o644 1.8 KB
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/fewer-FORMAT-than-GENO.vcf text/plain root:root 0o644 614 bytes
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/FORMAT_header_no_SAMPLEs.vcf text/plain root:root 0o644 602 bytes
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/missing-FORMAT-metadata-elt.vcf text/plain root:root 0o644 553 bytes
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/mixedStructural.vcf text/plain root:root 0o644 2.9 KB
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/multiple_INFO_fields.vcf text/plain root:root 0o644 439 bytes
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/negative_FORMAT_Number.vcf text/plain root:root 0o644 3.0 KB
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_FORMAT_column.vcf text/plain root:root 0o644 287 bytes
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_GENO_row.vcf text/plain root:root 0o644 573 bytes
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_INFO_header.vcf text/plain root:root 0o644 300 bytes
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/unspecified_INFO_FORMAT_fields.vcf text/plain root:root 0o644 1.6 KB
/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/VarScan_header.vcf text/plain root:root 0o644 3.0 KB
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_expand-methods.R text/plain root:root 0o644 2.0 KB
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_filterVcf.R text/plain root:root 0o644 4.9 KB
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_genotypeToSnpMatrix.R text/plain root:root 0o644 7.6 KB
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_isSNV.R text/plain root:root 0o644 3.7 KB
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_readVcf-methods.R text/plain root:root 0o644 9.0 KB
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_ScanVcfParam-class.R text/plain root:root 0o644 2.8 KB
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_scanVcf.R text/plain root:root 0o644 4.3 KB
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_snpSummary.R text/plain root:root 0o644 1.3 KB
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_summarizeVariants-methods.R text/plain root:root 0o644 635 bytes
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_VCF-class.R text/plain root:root 0o644 9.4 KB
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_VRanges-class.R text/plain root:root 0o644 10.7 KB
/usr/lib/R/site-library/VariantAnnotation/unitTests/test_writeVcf-methods.R text/plain root:root 0o644 3.7 KB
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/r-bioc-variantannotation/ root:root 0o755
/usr/share/doc/r-bioc-variantannotation/changelog.Debian.amd64.gz application/gzip root:root 0o644 229 bytes
/usr/share/doc/r-bioc-variantannotation/changelog.Debian.gz application/gzip root:root 0o644 520 bytes
/usr/share/doc/r-bioc-variantannotation/copyright text/plain root:root 0o644 5.3 KB
/usr/share/doc/r-bioc-variantannotation/README.test text/plain root:root 0o644 1.5 KB