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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 | Package: Rsamtools
Type: Package
Title: Binary alignment (BAM), variant call (BCF), or tabix file import
Version: 1.16.1
Author: Martin Morgan, Herv\'e Pag\`es, Valerie Obenchain
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
Description: This package provides an interface to the 'samtools',
'bcftools', and 'tabix' utilities (see 'LICENCE') for
manipulating SAM (Sequence Alignment / Map), binary variant
call (BCF) and compressed indexed tab-delimited (tabix) files.
URL: http://bioconductor.org/packages/release/bioc/html/Rsamtools.html
License: Artistic-2.0 | file LICENSE
LazyLoad: yes
Depends: methods, IRanges (>= 1.21.10), GenomicRanges (>= 1.15.11),
XVector (>= 0.3.2), Biostrings (>= 2.31.3), GenomeInfoDb(>=
0.99.17)
Imports: utils, BiocGenerics (>= 0.1.3), bitops
Suggests: GenomicAlignments, ShortRead (>= 1.19.10), GenomicFeatures,
TxDb.Dmelanogaster.UCSC.dm3.ensGene, KEGG.db,
TxDb.Hsapiens.UCSC.hg18.knownGene, RNAseqData.HNRNPC.bam.chr14,
BSgenome.Hsapiens.UCSC.hg19, pasillaBamSubset, RUnit, BiocStyle
LinkingTo: IRanges, XVector, Biostrings
biocViews: DataImport, Sequencing
Packaged: 2014-06-13 01:23:41 UTC; biocbuild
Built: R 3.1.1; x86_64-pc-linux-gnu; 2014-07-09 12:54:01 UTC; unix
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