This file is indexed.

/usr/lib/R/ is in r-bioc-rsamtools 1.16.1-2.

This file is owned by root:root, with mode 0o755.

File Mime Type Owner Mode Size
..
/usr/lib/R/site-library/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/DESCRIPTION text/plain root:root 0o644 1.3 KB
/usr/lib/R/site-library/Rsamtools/INDEX text/plain root:root 0o644 2.0 KB
/usr/lib/R/site-library/Rsamtools/Meta/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/Meta/Rd.rds application/gzip root:root 0o644 2.7 KB
/usr/lib/R/site-library/Rsamtools/Meta/hsearch.rds application/gzip root:root 0o644 2.8 KB
/usr/lib/R/site-library/Rsamtools/Meta/links.rds application/gzip root:root 0o644 1.9 KB
/usr/lib/R/site-library/Rsamtools/Meta/nsInfo.rds application/gzip root:root 0o644 696 bytes
/usr/lib/R/site-library/Rsamtools/Meta/package.rds application/gzip root:root 0o644 1.3 KB
/usr/lib/R/site-library/Rsamtools/Meta/vignette.rds application/gzip root:root 0o644 283 bytes
/usr/lib/R/site-library/Rsamtools/NAMESPACE text/plain root:root 0o644 1.2 KB
/usr/lib/R/site-library/Rsamtools/NEWS text/plain root:root 0o644 9.2 KB
/usr/lib/R/site-library/Rsamtools/R/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/R/Rsamtools text/plain root:root 0o644 1.0 KB
/usr/lib/R/site-library/Rsamtools/R/Rsamtools.rdb application/octet-stream root:root 0o644 336.3 KB
/usr/lib/R/site-library/Rsamtools/R/Rsamtools.rdx application/gzip root:root 0o644 5.2 KB
/usr/lib/R/site-library/Rsamtools/doc/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.R text/plain root:root 0o644 9.4 KB
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.Rnw text/x-tex root:root 0o644 19.7 KB
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.pdf application/pdf root:root 0o644 157.6 KB
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-UsingCLibraries.R text/plain root:root 0o644 221 bytes
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-UsingCLibraries.Rnw text/x-c root:root 0o644 3.2 KB
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-UsingCLibraries.pdf application/pdf root:root 0o644 89.0 KB
/usr/lib/R/site-library/Rsamtools/doc/index.html text/html root:root 0o644 1.7 KB
/usr/lib/R/site-library/Rsamtools/extdata/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/extdata/ce2dict1.fa text/plain root:root 0o644 176 bytes
/usr/lib/R/site-library/Rsamtools/extdata/ce2dict1.fa.fai text/plain root:root 0o644 112 bytes
/usr/lib/R/site-library/Rsamtools/extdata/ex1.bam application/gzip root:root 0o644 123.6 KB
/usr/lib/R/site-library/Rsamtools/extdata/ex1.bam.bai application/octet-stream root:root 0o644 72 bytes
/usr/lib/R/site-library/Rsamtools/extdata/ex1.bcf application/gzip root:root 0o644 72.9 KB
/usr/lib/R/site-library/Rsamtools/extdata/ex1.bcf.bci application/gzip root:root 0o644 77 bytes
/usr/lib/R/site-library/Rsamtools/extdata/ex1.sam text/plain root:root 0o644 546.3 KB
/usr/lib/R/site-library/Rsamtools/extdata/example.gtf.gz application/gzip root:root 0o644 3.7 KB
/usr/lib/R/site-library/Rsamtools/extdata/example.gtf.gz.tbi application/gzip root:root 0o644 259 bytes
/usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.bam application/gzip root:root 0o644 333 bytes
/usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.bam.bai application/octet-stream root:root 0o644 96 bytes
/usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.sam text/plain root:root 0o644 322 bytes
/usr/lib/R/site-library/Rsamtools/extdata/olaps.Rda application/gzip root:root 0o644 1.6 MB
/usr/lib/R/site-library/Rsamtools/extdata/pileup.txt text/plain root:root 0o644 135.3 KB
/usr/lib/R/site-library/Rsamtools/extdata/samtools-github.txt text/plain root:root 0o644 31 bytes
/usr/lib/R/site-library/Rsamtools/extdata/slxMaq09_urls.txt text/plain root:root 0o644 2.7 KB
/usr/lib/R/site-library/Rsamtools/extdata/tophat/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/extdata/tophat/README text/plain root:root 0o644 36 bytes
/usr/lib/R/site-library/Rsamtools/extdata/tophat/accepted_hits.sam text/plain root:root 0o644 35.2 KB
/usr/lib/R/site-library/Rsamtools/extdata/tophat/coverage.wig text/plain root:root 0o644 4.3 KB
/usr/lib/R/site-library/Rsamtools/extdata/tophat/junctions.bed text/plain root:root 0o644 196 bytes
/usr/lib/R/site-library/Rsamtools/help/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/help/AnIndex text/plain root:root 0o644 9.3 KB
/usr/lib/R/site-library/Rsamtools/help/Rsamtools.rdb application/octet-stream root:root 0o644 143.8 KB
/usr/lib/R/site-library/Rsamtools/help/Rsamtools.rdx application/gzip root:root 0o644 775 bytes
/usr/lib/R/site-library/Rsamtools/help/aliases.rds application/gzip root:root 0o644 1.9 KB
/usr/lib/R/site-library/Rsamtools/help/paths.rds application/gzip root:root 0o644 362 bytes
/usr/lib/R/site-library/Rsamtools/html/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/html/00Index.html text/html root:root 0o644 31.6 KB
/usr/lib/R/site-library/Rsamtools/html/R.css text/plain root:root 0o644 1.2 KB
/usr/lib/R/site-library/Rsamtools/include/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/include/samtools/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/include/samtools/bam.h text/x-c root:root 0o644 25.2 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/bam_endian.h text/x-c root:root 0o644 1.0 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/bcftools/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/include/samtools/bcftools/bcf.h text/x-c root:root 0o644 7.1 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/bcftools/prob1.h text/x-c root:root 0o644 1.4 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/bgzf.h text/x-c root:root 0o644 6.2 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/faidx.h text/x-c root:root 0o644 3.8 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/kaln.h text/x-c root:root 0o644 2.0 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/khash.h text/x-c root:root 0o644 17.4 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/knetfile.h text/x-c root:root 0o644 1.7 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/kprobaln.h text/x-c root:root 0o644 1.5 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/kseq.h text/x-c root:root 0o644 8.6 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/ksort.h text/x-c root:root 0o644 10.1 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/kstring.h text/x-c root:root 0o644 4.4 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/razf.h text/x-c root:root 0o644 4.0 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/sam.h text/x-c root:root 0o644 2.6 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/sam_header.h text/x-c root:root 0o644 1.6 KB
/usr/lib/R/site-library/Rsamtools/include/tabix/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/include/tabix/bgzf.h text/x-c root:root 0o644 6.2 KB
/usr/lib/R/site-library/Rsamtools/include/tabix/knetfile.h text/x-c root:root 0o644 1.7 KB
/usr/lib/R/site-library/Rsamtools/include/tabix/kstring.h text/x-c root:root 0o644 4.4 KB
/usr/lib/R/site-library/Rsamtools/include/tabix/tabix.h text/x-c root:root 0o644 4.6 KB
/usr/lib/R/site-library/Rsamtools/libs/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/libs/Rsamtools.so application/x-sharedlib root:root 0o644 407.1 KB
/usr/lib/R/site-library/Rsamtools/scripts/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/scripts/BamViews-1000g.R text/plain root:root 0o644 2.9 KB
/usr/lib/R/site-library/Rsamtools/scripts/features.R text/plain root:root 0o644 998 bytes
/usr/lib/R/site-library/Rsamtools/scripts/readAligned_prototype.R text/x-asm root:root 0o644 3.3 KB
/usr/lib/R/site-library/Rsamtools/scripts/remote_test.R text/plain root:root 0o644 763 bytes
/usr/lib/R/site-library/Rsamtools/scripts/update-samtools.sh text/x-shellscript root:root 0o755 997 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1.sam.gz application/gzip root:root 0o644 111.9 KB
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_noindex.bam application/gzip root:root 0o644 123.6 KB
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_shuf1000.bam application/gzip root:root 0o644 41.0 KB
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_shuf1000.bam.bai application/octet-stream root:root 0o644 72 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_unsort.bam application/gzip root:root 0o644 151.8 KB
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_zero_index.bam.bai application/x-empty root:root 0o644 0 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/cases/no_SAMPLE_header.vcf text/plain root:root 0o644 1020 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/cases/no_header_line.vcf text/plain root:root 0o644 807 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/cases/pileup-no-stars.txt text/plain root:root 0o644 1.6 KB
/usr/lib/R/site-library/Rsamtools/unitTests/cases/plp_refskip.bam application/gzip root:root 0o644 246 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/cases/plp_refskip.bam.bai application/octet-stream root:root 0o644 96 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/test_BamFile.R text/plain root:root 0o644 8.9 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_BamSampler.R text/plain root:root 0o644 1.0 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_BamViews.R text/plain root:root 0o644 5.6 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_BcfFile.R text/plain root:root 0o644 3.9 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_FaFile.R text/plain root:root 0o644 2.7 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_TabixFile.R text/plain root:root 0o644 3.0 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_applyPileups.R text/plain root:root 0o644 6.7 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_asBam.R text/plain root:root 0o644 549 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/test_bam.R text/plain root:root 0o644 11.2 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_bam_count.R text/plain root:root 0o644 1.6 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_bam_header.R text/plain root:root 0o644 304 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/test_compression.R text/plain root:root 0o644 1.3 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_readAligned.R text/plain root:root 0o644 3.8 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_readPileup.R text/plain root:root 0o644 1.1 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_scanBamFlag.R text/plain root:root 0o644 343 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/test_sortBam_test.R text/plain root:root 0o644 710 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/test_utilities.R text/plain root:root 0o644 392 bytes
/usr/lib/R/site-library/Rsamtools/usretc/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/usretc/Rsamtools.mk text/plain root:root 0o644 386 bytes
/usr/lib/R/site-library/Rsamtools/usrlib/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/usrlib/libbam.a application/x-archive root:root 0o644 271.2 KB
/usr/lib/R/site-library/Rsamtools/usrlib/libbcf.a application/x-archive root:root 0o644 115.4 KB
/usr/lib/R/site-library/Rsamtools/usrlib/libtabix.a application/x-archive root:root 0o644 89.3 KB