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/usr/share/doc/bowtie/examples/indexes/ is in bowtie-examples 1.1.1-2.

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File Mime Type Owner Mode Size
..
/usr/share/doc/bowtie/examples/indexes/e_coli.1.ebwt application/octet-stream root:root 0o644 1.4 MB
/usr/share/doc/bowtie/examples/indexes/e_coli.2.ebwt application/octet-stream root:root 0o644 602.9 KB
/usr/share/doc/bowtie/examples/indexes/e_coli.3.ebwt application/octet-stream root:root 0o644 17 bytes
/usr/share/doc/bowtie/examples/indexes/e_coli.4.ebwt application/octet-stream root:root 0o644 1.2 MB
/usr/share/doc/bowtie/examples/indexes/e_coli.README text/plain root:root 0o644 277 bytes
/usr/share/doc/bowtie/examples/indexes/e_coli.rev.1.ebwt application/octet-stream root:root 0o644 1.4 MB
/usr/share/doc/bowtie/examples/indexes/e_coli.rev.2.ebwt application/octet-stream root:root 0o644 602.9 KB