/usr/ is in bowtie-examples 1.1.1-2.
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/usr/share/doc/bowtie/examples/indexes/
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/usr/share/doc/bowtie/examples/indexes/e_coli.rev.2.ebwt
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/usr/share/doc/bowtie/examples/indexes/e_coli.rev.1.ebwt
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/usr/share/doc/bowtie/examples/indexes/e_coli.3.ebwt
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/usr/share/doc/bowtie/examples/indexes/e_coli.README
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/usr/share/doc/bowtie/examples/indexes/e_coli.2.ebwt
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/usr/share/doc/bowtie/examples/indexes/e_coli.1.ebwt
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/usr/share/doc/bowtie/examples/genomes/
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/usr/share/doc/bowtie-examples/
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/usr/share/doc/bowtie-examples/copyright
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/usr/share/doc/bowtie-examples/changelog.Debian.gz
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