/usr/lib/R/site-library/VariantAnnotation/DESCRIPTION is in r-bioc-variantannotation 1.16.3-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 | Package: VariantAnnotation
Type: Package
Title: Annotation of Genetic Variants
Description: Annotate variants, compute amino acid coding changes,
predict coding outcomes
Version: 1.16.3
Authors@R: c(person("Valerie", "Obenchain", role=c("aut", "cre"),
email="maintainer@bioconductor.org"),
person("Martin", "Morgan", role="aut"),
person("Michael", "Lawrence", role="aut"),
person("Stephanie", "Gogarten", role="ctb"))
License: Artistic-2.0
Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.15.3), GenomeInfoDb
(>= 1.1.3), GenomicRanges (>= 1.19.47), SummarizedExperiment
(>= 0.3.1), Rsamtools (>= 1.19.52)
Imports: utils, DBI, Biobase, S4Vectors (>= 0.7.11), IRanges (>=
2.3.25), XVector (>= 0.5.6), Biostrings (>= 2.33.5),
AnnotationDbi (>= 1.27.9), BSgenome (>= 1.37.6), rtracklayer
(>= 1.25.16), GenomicFeatures (>= 1.19.17)
Suggests: RUnit, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP.20110815,
SNPlocs.Hsapiens.dbSNP.20101109, SIFT.Hsapiens.dbSNP132,
SIFT.Hsapiens.dbSNP137, PolyPhen.Hsapiens.dbSNP131, snpStats,
ggplot2, BiocStyle
LinkingTo: S4Vectors, IRanges, XVector, Biostrings, Rsamtools
LazyLoad: yes
biocViews: DataImport, Sequencing, SNP, Annotation, Genetics,
VariantAnnotation
Video:
https://www.youtube.com/watch?v=Ro0lHQ_J--I&list=UUqaMSQd_h-2EDGsU6WDiX0Q
NeedsCompilation: yes
Packaged: 2015-11-03 02:49:55 UTC; biocbuild
Author: Valerie Obenchain [aut, cre],
Martin Morgan [aut],
Michael Lawrence [aut],
Stephanie Gogarten [ctb]
Maintainer: Valerie Obenchain <maintainer@bioconductor.org>
Built: R 3.2.3; x86_64-pc-linux-gnu; "Fri, 06 Nov 2015 13:08:13 +0100"; unix
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