About

This package is 3.1 MB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/r/r-bioc-rsamtools/r-bioc-rsamtools_1.22.0-1_amd64.deb .

View its full control file here: debian/control.

Description

GNU R binary alignment (BAM), variant call (BCF), or tabix file import

Relations

This package depends on: r-base-core (>= 3.2.2-1), r-api-3, libc6 (>= 2.15), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.3), r-cran-bitops, r-bioc-biostrings (>= 2.34.0), r-bioc-genomicranges (>= 1.18.0), r-bioc-biocparallel.

This package recommends: r-bioc-shortread.

This package does not suggest any other package.

This package does not conflict with any other package.

Package Contents

This package is indexed.

r-bioc-rsamtools 1.22.0-1 is in ubuntu - xenial / universe. This package's architecture is: amd64.

File Mime Type Owner Mode Size
/usr/ root:root 0o755
/usr/lib/ root:root 0o755
/usr/lib/R/ root:root 0o755
/usr/lib/R/site-library/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/DESCRIPTION text/plain root:root 0o644 1.5 KB
/usr/lib/R/site-library/Rsamtools/doc/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/doc/index.html text/html root:root 0o644 1.9 KB
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.pdf application/pdf root:root 0o644 137.6 KB
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.R text/plain root:root 0o644 9.4 KB
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.Rnw text/x-tex root:root 0o644 19.4 KB
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-UsingCLibraries.pdf application/pdf root:root 0o644 84.2 KB
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-UsingCLibraries.R text/plain root:root 0o644 221 bytes
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-UsingCLibraries.Rnw text/x-c root:root 0o644 3.9 KB
/usr/lib/R/site-library/Rsamtools/extdata/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/extdata/ce2dict1.fa text/plain root:root 0o644 176 bytes
/usr/lib/R/site-library/Rsamtools/extdata/ce2dict1.fa.fai text/plain root:root 0o644 112 bytes
/usr/lib/R/site-library/Rsamtools/extdata/ex1.bam application/gzip root:root 0o644 123.6 KB
/usr/lib/R/site-library/Rsamtools/extdata/ex1.bam.bai application/octet-stream root:root 0o644 176 bytes
/usr/lib/R/site-library/Rsamtools/extdata/ex1.bcf application/gzip root:root 0o644 72.9 KB
/usr/lib/R/site-library/Rsamtools/extdata/ex1.bcf.bci application/gzip root:root 0o644 77 bytes
/usr/lib/R/site-library/Rsamtools/extdata/ex1.sam text/plain root:root 0o644 546.3 KB
/usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.bam application/gzip root:root 0o644 348 bytes
/usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.bam.bai application/octet-stream root:root 0o644 96 bytes
/usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.sam text/plain root:root 0o644 368 bytes
/usr/lib/R/site-library/Rsamtools/extdata/example.gtf.gz application/gzip root:root 0o644 3.7 KB
/usr/lib/R/site-library/Rsamtools/extdata/example.gtf.gz.tbi application/gzip root:root 0o644 259 bytes
/usr/lib/R/site-library/Rsamtools/extdata/no_which_buffered_pileup.bam application/gzip root:root 0o644 203 bytes
/usr/lib/R/site-library/Rsamtools/extdata/no_which_buffered_pileup.bam.bai application/octet-stream root:root 0o644 176 bytes
/usr/lib/R/site-library/Rsamtools/extdata/no_which_buffered_pileup.sam text/plain root:root 0o644 240 bytes
/usr/lib/R/site-library/Rsamtools/extdata/no_which_whole_file.bam application/gzip root:root 0o644 198 bytes
/usr/lib/R/site-library/Rsamtools/extdata/no_which_whole_file.bam.bai application/octet-stream root:root 0o644 176 bytes
/usr/lib/R/site-library/Rsamtools/extdata/no_which_whole_file.sam text/plain root:root 0o644 168 bytes
/usr/lib/R/site-library/Rsamtools/extdata/olaps.Rda application/gzip root:root 0o644 1.6 MB
/usr/lib/R/site-library/Rsamtools/extdata/pileup.txt text/plain root:root 0o644 135.3 KB
/usr/lib/R/site-library/Rsamtools/extdata/querybins.bam application/gzip root:root 0o644 181 bytes
/usr/lib/R/site-library/Rsamtools/extdata/querybins.bam.bai application/octet-stream root:root 0o644 96 bytes
/usr/lib/R/site-library/Rsamtools/extdata/querybins.sam text/plain root:root 0o644 117 bytes
/usr/lib/R/site-library/Rsamtools/extdata/revbins.bam application/gzip root:root 0o644 381 bytes
/usr/lib/R/site-library/Rsamtools/extdata/revbins.bam.bai application/octet-stream root:root 0o644 416 bytes
/usr/lib/R/site-library/Rsamtools/extdata/revbins.sam text/plain root:root 0o644 770 bytes
/usr/lib/R/site-library/Rsamtools/extdata/samtools-github.txt text/plain root:root 0o644 31 bytes
/usr/lib/R/site-library/Rsamtools/extdata/slxMaq09_urls.txt text/plain root:root 0o644 2.7 KB
/usr/lib/R/site-library/Rsamtools/extdata/tagfilter.bam application/gzip root:root 0o644 333 bytes
/usr/lib/R/site-library/Rsamtools/extdata/tagfilter.bam.bai application/octet-stream root:root 0o644 656 bytes
/usr/lib/R/site-library/Rsamtools/extdata/tagfilter.sam text/plain root:root 0o644 804 bytes
/usr/lib/R/site-library/Rsamtools/extdata/tiny.bam application/gzip root:root 0o644 1.1 KB
/usr/lib/R/site-library/Rsamtools/extdata/tiny.bam.bai application/octet-stream root:root 0o644 2.3 KB
/usr/lib/R/site-library/Rsamtools/extdata/tiny.sam text/plain root:root 0o644 4.0 KB
/usr/lib/R/site-library/Rsamtools/extdata/tophat/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/extdata/tophat/accepted_hits.sam text/plain root:root 0o644 35.2 KB
/usr/lib/R/site-library/Rsamtools/extdata/tophat/coverage.wig text/plain root:root 0o644 4.3 KB
/usr/lib/R/site-library/Rsamtools/extdata/tophat/junctions.bed text/plain root:root 0o644 196 bytes
/usr/lib/R/site-library/Rsamtools/extdata/tophat/README text/plain root:root 0o644 36 bytes
/usr/lib/R/site-library/Rsamtools/help/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/help/aliases.rds application/gzip root:root 0o644 2.4 KB
/usr/lib/R/site-library/Rsamtools/help/AnIndex text/plain root:root 0o644 11.1 KB
/usr/lib/R/site-library/Rsamtools/help/paths.rds application/gzip root:root 0o644 369 bytes
/usr/lib/R/site-library/Rsamtools/help/Rsamtools.rdb application/octet-stream root:root 0o644 167.0 KB
/usr/lib/R/site-library/Rsamtools/help/Rsamtools.rdx application/gzip root:root 0o644 766 bytes
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/usr/lib/R/site-library/Rsamtools/html/00Index.html text/html root:root 0o644 39.9 KB
/usr/lib/R/site-library/Rsamtools/html/R.css text/plain root:root 0o644 1.3 KB
/usr/lib/R/site-library/Rsamtools/include/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/include/samtools/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/include/samtools/bam_endian.h text/x-c root:root 0o644 1.0 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/bam.h text/x-c root:root 0o644 25.2 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/bcftools/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/include/samtools/bcftools/bcf.h text/x-c root:root 0o644 7.1 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/bcftools/prob1.h text/x-c root:root 0o644 1.4 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/bgzf.h text/x-c root:root 0o644 6.2 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/faidx.h text/x-c root:root 0o644 4.0 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/kaln.h text/x-c root:root 0o644 2.0 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/khash.h text/x-c root:root 0o644 17.4 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/knetfile.h text/x-c root:root 0o644 1.7 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/kprobaln.h text/x-c root:root 0o644 1.5 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/kseq.h text/x-c root:root 0o644 8.6 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/ksort.h text/x-c root:root 0o644 10.1 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/kstring.h text/x-c root:root 0o644 4.4 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/razf.h text/x-c root:root 0o644 4.0 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/sam.h text/x-c root:root 0o644 2.6 KB
/usr/lib/R/site-library/Rsamtools/include/samtools/sam_header.h text/x-c root:root 0o644 1.6 KB
/usr/lib/R/site-library/Rsamtools/include/tabix/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/include/tabix/bgzf.h text/x-c root:root 0o644 6.2 KB
/usr/lib/R/site-library/Rsamtools/include/tabix/knetfile.h text/x-c root:root 0o644 1.7 KB
/usr/lib/R/site-library/Rsamtools/include/tabix/kstring.h text/x-c root:root 0o644 4.4 KB
/usr/lib/R/site-library/Rsamtools/include/tabix/tabix.h text/x-c root:root 0o644 4.6 KB
/usr/lib/R/site-library/Rsamtools/INDEX text/plain root:root 0o644 2.1 KB
/usr/lib/R/site-library/Rsamtools/libs/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/libs/Rsamtools.so application/x-sharedlib root:root 0o644 465.1 KB
/usr/lib/R/site-library/Rsamtools/Meta/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/Meta/hsearch.rds application/gzip root:root 0o644 3.2 KB
/usr/lib/R/site-library/Rsamtools/Meta/links.rds application/gzip root:root 0o644 2.3 KB
/usr/lib/R/site-library/Rsamtools/Meta/nsInfo.rds application/gzip root:root 0o644 738 bytes
/usr/lib/R/site-library/Rsamtools/Meta/package.rds application/gzip root:root 0o644 1.5 KB
/usr/lib/R/site-library/Rsamtools/Meta/Rd.rds application/gzip root:root 0o644 3.1 KB
/usr/lib/R/site-library/Rsamtools/Meta/vignette.rds application/gzip root:root 0o644 284 bytes
/usr/lib/R/site-library/Rsamtools/NAMESPACE text/plain root:root 0o644 1.3 KB
/usr/lib/R/site-library/Rsamtools/NEWS text/plain root:root 0o644 12.3 KB
/usr/lib/R/site-library/Rsamtools/R/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/R/Rsamtools text/plain root:root 0o644 1.0 KB
/usr/lib/R/site-library/Rsamtools/R/Rsamtools.rdb application/octet-stream root:root 0o644 382.6 KB
/usr/lib/R/site-library/Rsamtools/R/Rsamtools.rdx application/gzip root:root 0o644 6.0 KB
/usr/lib/R/site-library/Rsamtools/scripts/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/scripts/BamViews-1000g.R text/plain root:root 0o644 2.9 KB
/usr/lib/R/site-library/Rsamtools/scripts/features.R text/plain root:root 0o644 998 bytes
/usr/lib/R/site-library/Rsamtools/scripts/remote_test.R text/plain root:root 0o644 763 bytes
/usr/lib/R/site-library/Rsamtools/scripts/update-samtools.sh text/x-shellscript root:root 0o755 997 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ root:root 0o755
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_noindex.bam application/gzip root:root 0o644 123.6 KB
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1.sam.gz application/gzip root:root 0o644 111.9 KB
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_shuf1000.bam application/gzip root:root 0o644 41.0 KB
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/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_unsort.bam application/gzip root:root 0o644 151.8 KB
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_zero_index.bam.bai application/x-empty root:root 0o644 0 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/cases/no_header_line.vcf text/plain root:root 0o644 807 bytes
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/usr/lib/R/site-library/Rsamtools/unitTests/cases/pileup-no-stars.txt text/plain root:root 0o644 1.6 KB
/usr/lib/R/site-library/Rsamtools/unitTests/cases/plp_refskip.bam application/gzip root:root 0o644 246 bytes
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/usr/lib/R/site-library/Rsamtools/unitTests/test_applyPileups.R text/plain root:root 0o644 6.9 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_asBam.R text/plain root:root 0o644 549 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/test_bam_count.R text/plain root:root 0o644 1.9 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_BamFile.R text/plain root:root 0o644 10.7 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_bam_header.R text/plain root:root 0o644 304 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/test_bam.R text/plain root:root 0o644 11.7 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_BamViews.R text/plain root:root 0o644 5.7 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_BcfFile.R text/plain root:root 0o644 3.9 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_compression.R text/plain root:root 0o644 1.3 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_FaFile.R text/plain root:root 0o644 2.8 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_mapqfilter.R text/plain root:root 0o644 832 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/test_pileup_nowhich.R text/plain root:root 0o644 5.6 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_pileup_querybins.R text/plain root:root 0o644 14.5 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_pileup_revbins.R text/plain root:root 0o644 18.3 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_pileup_single_range.R text/plain root:root 0o644 51.0 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_readPileup.R text/plain root:root 0o644 1.1 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_scanBamFlag.R text/plain root:root 0o644 343 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/test_sortBam_test.R text/plain root:root 0o644 710 bytes
/usr/lib/R/site-library/Rsamtools/unitTests/test_TabixFile.R text/plain root:root 0o644 3.0 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_tagfilter.R text/plain root:root 0o644 3.5 KB
/usr/lib/R/site-library/Rsamtools/unitTests/test_testPairedEndBam.R text/plain root:root 0o644 183 bytes
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