python3-h5py 2.6.0-1 / usr / lib / python3 / dist-packages / h5py / tests / hl / test_dataset_getitem.py

# This file is part of h5py, a Python interface to the HDF5 library.
#
# http://www.h5py.org
#
# Copyright 2008-2013 Andrew Collette and contributors
#
# License:  Standard 3-clause BSD; see "license.txt" for full license terms
#           and contributor agreement.

"""
    Tests the h5py.Dataset.__getitem__ method.
    
    This module does not specifically test type conversion.  The "type" axis
    therefore only tests objects which interact with the slicing system in
    unreliable ways; for example, compound and array types.  
    
    See test_dataset_getitem_types for type-conversion tests.
    
    Tests are organized into TestCases by dataset shape and type.  Test
    methods vary by slicing arg type.
    
    1. Dataset shape:
        Empty
        Scalar
        1D
        3D
        
    2. Type:
        Float
        Compound
        Array

    3. Slicing arg types:
        Ellipsis
        Empty tuple
        Regular slice
        Indexing
        Index list
        Boolean mask
        Field names
"""

from __future__ import absolute_import

import numpy as np
import h5py

from ..common import ut, TestCase


class TestEmpty(TestCase):

    def setUp(self):
        TestCase.setUp(self)
        sid = h5py.h5s.create(h5py.h5s.NULL)
        tid = h5py.h5t.C_S1.copy()
        tid.set_size(10)
        dsid = h5py.h5d.create(self.f.id, b'x', tid, sid)
        self.dset = h5py.Dataset(dsid)
        
    def test_ndim(self):
        """ Verify number of dimensions """
        self.assertEquals(self.dset.ndim, 0)
        
    def test_shape(self):
        """ Verify shape """
        self.assertEquals(self.dset.shape, tuple())
        
    def test_ellipsis(self):
        """ Ellipsis -> IOError """
        with self.assertRaises(IOError):
            out = self.dset[...]
        
    def test_tuple(self):
        """ () -> IOError """
        with self.assertRaises(IOError):
            out = self.dset[()]
        
    def test_slice(self):
        """ slice -> ValueError """
        with self.assertRaises(ValueError):
            self.dset[0:4]
        
    def test_index(self):
        """ index -> ValueError """
        with self.assertRaises(ValueError):
            self.dset[0]

    def test_indexlist(self):
        """ index list -> ValueError """
        with self.assertRaises(ValueError):
            self.dset[[1,2,5]]
        
    def test_mask(self):
        """ mask -> ValueError """
        mask = np.array(True, dtype='bool')
        with self.assertRaises(ValueError):
            self.dset[mask]
        
    def test_fieldnames(self):
        """ field name -> ValueError """
        with self.assertRaises(ValueError):
            self.dset['field']


class TestScalarFloat(TestCase):

    def setUp(self):
        TestCase.setUp(self)
        self.data = np.array(42.5, dtype='f')
        self.dset = self.f.create_dataset('x', data=self.data)
        
    def test_ndim(self):
        """ Verify number of dimensions """
        self.assertEquals(self.dset.ndim, 0)
        
    def test_shape(self):
        """ Verify shape """
        self.assertEquals(self.dset.shape, tuple())

    def test_ellipsis(self):
        """ Ellipsis -> scalar ndarray """
        out = self.dset[...]
        self.assertArrayEqual(out, self.data)
        
    def test_tuple(self):
        """ () -> bare item """
        out = self.dset[()]
        self.assertArrayEqual(out, self.data.item())
        
    def test_slice(self):
        """ slice -> ValueError """
        with self.assertRaises(ValueError):
            self.dset[0:4]
        
    def test_index(self):
        """ index -> ValueError """
        with self.assertRaises(ValueError):
            self.dset[0]

    # FIXME: NumPy has IndexError instead
    def test_indexlist(self):
        """ index list -> ValueError """
        with self.assertRaises(ValueError):
            self.dset[[1,2,5]]
        
    # FIXME: NumPy permits this
    def test_mask(self):
        """ mask -> ValueError """
        mask = np.array(True, dtype='bool')
        with self.assertRaises(ValueError):
            self.dset[mask]
        
    def test_fieldnames(self):
        """ field name -> ValueError (no fields) """
        with self.assertRaises(ValueError):
            self.dset['field']


class TestScalarCompound(TestCase):

    def setUp(self):
        TestCase.setUp(self)
        self.data = np.array((42.5, -118, "Hello"), dtype=[('a', 'f'), ('b', 'i'), ('c', '|S10')])
        self.dset = self.f.create_dataset('x', data=self.data)
        
    def test_ndim(self):
        """ Verify number of dimensions """
        self.assertEquals(self.dset.ndim, 0)
        
    def test_shape(self):
        """ Verify shape """
        self.assertEquals(self.dset.shape, tuple())

    def test_ellipsis(self):
        """ Ellipsis -> scalar ndarray """
        out = self.dset[...]
        # assertArrayEqual doesn't work with compounds; do manually
        self.assertIsInstance(out, np.ndarray)
        self.assertEqual(out.shape, self.data.shape)
        self.assertEqual(out.dtype, self.data.dtype)
        
    def test_tuple(self):
        """ () -> np.void instance """
        out = self.dset[()]
        self.assertIsInstance(out, np.void)
        self.assertEqual(out.dtype, self.data.dtype)
        
    def test_slice(self):
        """ slice -> ValueError """
        with self.assertRaises(ValueError):
            self.dset[0:4]
        
    def test_index(self):
        """ index -> ValueError """
        with self.assertRaises(ValueError):
            self.dset[0]

    # FIXME: NumPy has IndexError instead
    def test_indexlist(self):
        """ index list -> ValueError """
        with self.assertRaises(ValueError):
            self.dset[[1,2,5]]
        
    # FIXME: NumPy permits this
    def test_mask(self):
        """ mask -> ValueError  """
        mask = np.array(True, dtype='bool')
        with self.assertRaises(ValueError):
            self.dset[mask]
        
    # FIXME: NumPy returns a scalar ndarray
    def test_fieldnames(self):
        """ field name -> bare value """
        out = self.dset['a']
        self.assertIsInstance(out, np.float32)
        self.assertEqual(out, self.dset['a'])


class TestScalarArray(TestCase):

    def setUp(self):
        TestCase.setUp(self)
        self.dt = np.dtype('(3,2)f')
        self.data = np.array([(3.2, -119), (42, 99.8), (3.14, 0)], dtype='f')
        self.dset = self.f.create_dataset('x', (), dtype=self.dt)
        self.dset[...] = self.data
        
    def test_ndim(self):
        """ Verify number of dimensions """
        self.assertEquals(self.data.ndim, 2)
        self.assertEquals(self.dset.ndim, 0)
        
    def test_shape(self):
        """ Verify shape """
        self.assertEquals(self.data.shape, (3, 2))
        self.assertEquals(self.dset.shape, tuple())

    def test_ellipsis(self):
        """ Ellipsis -> ndarray promoted to underlying shape """
        out = self.dset[...]
        self.assertArrayEqual(out, self.data)
        
    def test_tuple(self):
        """ () -> same as ellipsis """
        out = self.dset[...]
        self.assertArrayEqual(out, self.data)
        
    def test_slice(self):
        """ slice -> ValueError """
        with self.assertRaises(ValueError):
            self.dset[0:4]

    def test_index(self):
        """ index -> ValueError """
        with self.assertRaises(ValueError):
            self.dset[0]
            
    def test_indexlist(self):
        """ index list -> ValueError """
        with self.assertRaises(ValueError):
            self.dset[[]]
        
    def test_mask(self):
        """ mask -> ValueError """
        mask = np.array(True, dtype='bool')
        with self.assertRaises(ValueError):
            self.dset[mask]
        
    def test_fieldnames(self):
        """ field name -> ValueError (no fields) """
        with self.assertRaises(ValueError):
            self.dset['field']

            
@ut.skipUnless(h5py.version.hdf5_version_tuple >= (1, 8, 7), 'HDF5 1.8.7+ required')
class Test1DZeroFloat(TestCase):

    def setUp(self):
        TestCase.setUp(self)
        self.data = np.ones((0,), dtype='f')
        self.dset = self.f.create_dataset('x', data=self.data)
        
    def test_ndim(self):
        """ Verify number of dimensions """
        self.assertEquals(self.dset.ndim, 1)
        
    def test_shape(self):
        """ Verify shape """
        self.assertEquals(self.dset.shape, (0,))

    def test_ellipsis(self):
        """ Ellipsis -> ndarray of matching shape """
        self.assertNumpyBehavior(self.dset, self.data, np.s_[...])
        
    def test_tuple(self):
        """ () -> same as ellipsis """
        self.assertNumpyBehavior(self.dset, self.data, np.s_[()])
        
    def test_slice(self):
        """ slice -> ndarray of shape (0,) """
        self.assertNumpyBehavior(self.dset, self.data, np.s_[0:4])

    # FIXME: NumPy raises IndexError
    def test_index(self):
        """ index -> out of range """
        with self.assertRaises(ValueError):
            self.dset[0]
            
    # FIXME: Under NumPy this works and returns a shape-(0,) array
    # Also, at the moment it rasies UnboundLocalError (!)
    @ut.expectedFailure
    def test_indexlist(self):
        """ index list """
        with self.assertRaises(ValueError):
            self.dset[[]]
        
    def test_mask(self):
        """ mask -> ndarray of matching shape """
        mask = np.ones((0,), dtype='bool')
        self.assertNumpyBehavior(self.dset, self.data, np.s_[mask])
        
    def test_fieldnames(self):
        """ field name -> ValueError (no fields) """
        with self.assertRaises(ValueError):
            self.dset['field']


class Test1DFloat(TestCase):

    def setUp(self):
        TestCase.setUp(self)
        self.data = np.arange(13).astype('f')
        self.dset = self.f.create_dataset('x', data=self.data)
        
    def test_ndim(self):
        """ Verify number of dimensions """
        self.assertEquals(self.dset.ndim, 1)
        
    def test_shape(self):
        """ Verify shape """
        self.assertEquals(self.dset.shape, (13,))

    def test_ellipsis(self):
        self.assertNumpyBehavior(self.dset, self.data, np.s_[...])
        
    def test_tuple(self):
        self.assertNumpyBehavior(self.dset, self.data, np.s_[()])
        
    def test_slice_simple(self):
        self.assertNumpyBehavior(self.dset, self.data, np.s_[0:4])
        
    def test_slice_zerosize(self):
        self.assertNumpyBehavior(self.dset, self.data, np.s_[4:4])
           
    def test_slice_strides(self):
        self.assertNumpyBehavior(self.dset, self.data, np.s_[1:7:3])

    def test_slice_negindexes(self):
        self.assertNumpyBehavior(self.dset, self.data, np.s_[-8:-2:3])

    def test_slice_outofrange(self):
        self.assertNumpyBehavior(self.dset, self.data, np.s_[100:400:3])
                 
    def test_slice_backwards(self):
        """ we disallow negative steps """
        with self.assertRaises(ValueError):
            self.dset[::-1]
            
    def test_slice_zerostride(self):
        self.assertNumpyBehavior(self.dset, self.data, np.s_[::0])
            
    def test_index_simple(self):
        self.assertNumpyBehavior(self.dset, self.data, np.s_[3])

    def test_index_neg(self):
        self.assertNumpyBehavior(self.dset, self.data, np.s_[-4])

    # FIXME: NumPy permits this... it adds a new axis in front
    def test_index_none(self):
        with self.assertRaises(TypeError):
            self.dset[None]
            
    # FIXME: NumPy raises IndexError
    # Also this currently raises UnboundLocalError. :(
    @ut.expectedFailure
    def test_index_illegal(self):
        """ Illegal slicing argument """
        with self.assertRaises(TypeError):
            self.dset[{}]

    # FIXME: NumPy raises IndexError
    def test_index_outofrange(self):
        with self.assertRaises(ValueError):
            self.dset[100]
        
    def test_indexlist_simple(self):
        self.assertNumpyBehavior(self.dset, self.data, np.s_[[1,2,5]])
        
    # Another UnboundLocalError
    @ut.expectedFailure
    def test_indexlist_empty(self):
        self.assertNumpyBehavior(self.dset, self.data, np.s_[[]])
         
    # FIXME: NumPy has IndexError
    def test_indexlist_outofrange(self):
        with self.assertRaises(ValueError):
            self.dset[[100]]
                
    def test_indexlist_nonmonotonic(self):
        """ we require index list values to be strictly increasing """
        with self.assertRaises(TypeError):
            self.dset[[1,3,2]]
        
    # This results in IOError as the argument is not properly validated.
    # Suggest IndexError be raised.
    @ut.expectedFailure
    def test_indexlist_repeated(self):
        """ we forbid repeated index values """
        with self.assertRaises(TypeError):
            self.dset[[1,1,2]]
            
    def test_mask_true(self):
        self.assertNumpyBehavior(self.dset, self.data, np.s_[self.data > -100])

    def test_mask_false(self):
        self.assertNumpyBehavior(self.dset, self.data, np.s_[self.data > 100])

    def test_mask_partial(self):
        self.assertNumpyBehavior(self.dset, self.data, np.s_[self.data > 5])
        
    def test_mask_wrongsize(self):
        """ we require the boolean mask shape to match exactly """
        with self.assertRaises(TypeError):
            self.dset[np.ones((2,), dtype='bool')]
        
    def test_fieldnames(self):
        """ field name -> ValueError (no fields) """
        with self.assertRaises(ValueError):
            self.dset['field']
            

@ut.skipUnless(h5py.version.hdf5_version_tuple >= (1, 8, 7), 'HDF5 1.8.7+ required')
class Test2DZeroFloat(TestCase):

    def setUp(self):
        TestCase.setUp(self)
        self.data = np.ones((0,3), dtype='f')
        self.dset = self.f.create_dataset('x', data=self.data)
        
    def test_ndim(self):
        """ Verify number of dimensions """
        self.assertEquals(self.dset.ndim, 2)
        
    def test_shape(self):
        """ Verify shape """
        self.assertEquals(self.dset.shape, (0, 3))
        
    @ut.expectedFailure
    def test_indexlist(self):
        """ see issue #473 """
        self.assertNumpyBehavior(self.dset, self.data, np.s_[:,[0,1,2]])