/usr/lib/python2.7/dist-packages/pymc/examples/melanoma_data.py is in python-pymc 2.2+ds-1.1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 | from numpy import *
melanoma_data = reshape([1.57808, 0.00000, 2, 1.27, 35.9945, 1, 1.48219,
0.00000, 2, 0.76, 41.9014, 1, 0.0, 7.33425, 1, 35.00, 70.2164, 2, 2.23288,
0.00000, 1, 1.70, 33.7096, 1, 0.0, 9.38356, 2, 1.00, 47.9726, 1, 3.27671,
0.00000, 1, 11.00, 31.8219, 2, 0.0, 9.64384, 1, 6.50, 32.9479, 1, 1.66575,
0.00000, 2, 3.62, 35.9205, 1, 0.94247, 0.00000, 1, 8.50, 40.5068, 2,
1.68767, 0.00000, 2, 4.20, 57.0384, 1, 2.34247, 0.00000, 2, 5.00, 62.0630, 1,
0.89863, 0.00000, 1, 2.25, 56.5342, 1, 0.0, 9.03288, 2, 2.30, 22.9945, 2,
0.0, 9.63014, 2, 10.00, 18.4712, 1, 0.52603, 0.00000, 1, 3.35, 41.2521, 1,
1.82192, 0.00000, 2, 3.80, 29.5178, 1, 0.93425, 0.00000, 1, 0.75, 59.0493, 2,
0.0, 8.98630, 2, 0.50, 32.2877, 1, 3.35068, 0.00000, 1, 0.46, 26.4822, 1,
8.67397, 0.00000, 1, 2.55, 55.0411, 1, 0.41096, 0.00000, 2, 1.95, 55.1233, 2,
2.78630, 0.00000, 1, 2.50, 22.4055, 2, 2.56438, 0.00000, 1, 2.10, 50.8466, 1,
0.0, 8.75342, 2, 9.00, 56.0274, 1, 0.56986, 0.00000, 2, 5.00, 55.4767, 1,
0.0, 8.40000, 1, 0.55, 41.2411, 1, 0.0, 7.25205, 1, 12.50, 32.7425, 1,
4.38630, 0.00000, 2, 1.16, 45.3479, 1, 0.0, 8.36712, 2, 4.25, 42.8438, 2,
0.0, 8.99178, 2, 15.00, 51.1068, 1, 0.86575, 0.00000, 2, 0.72, 30.1808, 1,
0.0, 4.76986, 1, 1.50, 58.7014, 2, 1.15616, 0.00000, 2, 6.50, 51.5397, 1,
0.0, 7.28767, 1, 2.75, 27.1973, 1, 3.13151, 0.00000, 1, 3.83, 67.6740, 1,
0.0, 8.55068, 2, 1.80, 64.4274, 2, 0.0, 8.45753, 2, 4.75, 35.4411, 1,
4.59452, 0.00000, 1, 5.80, 35.9452, 1, 2.88219, 0.00000, 2, 0.51, 48.1370, 1,
0.89589, 0.00000, 1, 3.25, 58.6082, 1, 1.76164, 0.00000, 2, 0.90, 40.0137, 2,
0.0, 7.81370, 1, 3.45, 26.0055, 1, 0.0, 8.33425, 2, 1.38, 36.9616, 1,
2.62192, 0.00000, 1, 5.28, 25.9068, 2, 0.16164, 0.00000, 2, 3.00, 63.8055, 1,
0.0, 8.24658, 1, 2.20, 29.6986, 2, 1.52603, 0.00000, 1, 7.00, 61.6384, 1,
5.30959, 0.00000, 1, 4.00, 49.9918, 1, 0.87123, 0.00000, 2, 2.36, 37.1068, 1,
0.41644, 0.00000, 1, 1.06, 53.4658, 2, 4.24110, 0.00000, 1, 6.50, 57.7425, 2,
0.13699, 0.00000, 1, 10.00, 29.1479, 1, 7.07671, 0.00000, 2, 1.20, 59.2466,
1, 0.13151, 0.00000, 2, 15.00, 61.3507, 2, 0.0, 8.02740, 1, 0.49, 33.9205,
2, 0.0, 6.16164, 2, 1.60, 43.1918, 1, 1.29863, 0.00000, 2, 11.50, 34.1890,
2, 1.29041, 0.00000, 2, 1.90, 58.3808, 2, 0.0, 7.99726, 1, 4.80, 21.9479,
2, 0.0, 8.34795, 1, 0.55, 35.1151, 1, 0.0, 7.30137, 2, 6.50, 31.6493, 1,
2.32877, 0.00000, 2, 12.00, 56.1890, 1, 0.56438, 0.00000, 1, 7.00, 60.7123,
1, 5.62740, 0.00000, 2, 6.50, 58.8329, 2, 1.23014, 0.00000, 1, 1.60,
44.4849, 2, 0.0, 7.94521, 1, 1.15, 51.1315, 2, 5.06301, 0.00000, 1, 2.65,
34.2164, 1, 3.27671, 0.00000, 2, 2.00, 35.2301, 1, 0.0, 0.60822, 2, 2.50,
32.7425, 2, 0.65753, 0.00000, 1, 4.38, 38.0986, 2, 0.84110, 0.00000, 2,
2.93, 45.7699, 1, 0.0, 8.40000, 2, 3.00, 44.2000, 1, 0.18356, 0.00000, 1,
2.50, 71.3260, 1, 2.62466, 0.00000, 2, 2.30, 59.0795, 1, 0.0, 7.96438, 2,
2.00, 35.3836, 2, 0.0, 7.77808, 1, 0.75, 58.0438, 2, 0.22192, 0.00000, 1,
5.00, 43.2164, 1, 2.33973, 0.00000, 1, 10.00, 60.4932, 1, 0.52329, 0.00000,
1, 0.87, 32.4795, 2, 0.0, 8.04110, 2, 1.33, 60.2986, 1, 0.0, 7.83288, 1,
5.60, 47.1342, 1, 0.64110, 0.00000, 1, 2.55, 42.3233, 1, 0.38356, 0.00000,
1, 6.50, 54.4164, 1, 0.0, 7.82192, 2, 1.20, 51.4219, 1, 0.51781, 0.00000,
2, 3.00, 46.5973, 1, 0.0, 8.09863, 2, 2.55, 58.3562, 1, 0.0, 8.16712, 2,
1.61, 25.6712, 2, 4.42740, 0.00000, 1, 1.40, 29.1726, 1, 0.88493, 0.00000,
1, 2.25, 18.6795, 1, 2.78356, 0.00000, 1, 4.50, 60.9671, 2, 2.64658,
0.00000, 2, 0.81, 63.8849, 2, 0.0, 8.21370, 2, 1.30, 37.9808, 2, 0.0,
7.41918, 2, 3.20, 32.3507, 2, 0.99726, 0.00000, 1, 1.29, 42.9589, 1,
5.88493, 0.00000, 2, 4.40, 40.9562, 1, 0.41644, 0.00000, 1, 6.00, 61.9753, 1,
3.53699, 0.00000, 1, 3.93, 55.3315, 2, 0.0, 7.56164, 1, 0.60, 36.0767, 1,
0.0, 7.53151, 1, 0.75, 50.6795, 1, 0.27671, 0.00000, 1, 0.73, 66.6986, 1,
0.76986, 0.00000, 2, 0.20, 29.3479, 2, 0.0, 7.62192, 2, 3.88, 33.1863, 1,
0.0, 7.79726, 1, 2.48, 48.6356, 2, 0.64110, 0.00000, 1, 2.50, 29.4877, 1,
1.14521, 0.00000, 2, 10.00, 42.6685, 1, 2.01644, 0.00000, 1, 16.00, 24.4055,
2, 2.84384, 0.00000, 1, 4.00, 40.3890, 1, 0.0, 7.00000, 2, 1.35, 45.4192,
1, 1.27397, 0.00000, 2, 3.00, 65.3945, 1, 0.0, 7.09589, 1, 10.72, 47.5753,
2, 2.04110, 0.00000, 1, 1.50, 58.4438, 2, 0.83562, 0.00000, 1, 3.50,
59.2767, 2, 0.92329, 0.00000, 1, 1.10, 30.2630, 2, 0.07397, 0.00000, 1,
1.00, 40.7370, 1, 0.0, 7.30685, 2, 5.10, 44.7452, 1, 2.07671, 0.00000, 2,
0.50, 67.8329, 1, 0.0, 7.70959, 2, 4.03, 27.7452, 1, 0.0, 6.15890, 1,
1.80, 25.9260, 2, 0.0, 6.89315, 2, 3.50, 31.2740, 1, 3.30685, 0.00000, 1,
1.15, 58.8822, 2, 0.36164, 0.00000, 1, 1.75, 57.0575, 1, 1.97808, 0.00000,
2, 2.50, 59.8137, 1, 1.23836, 0.00000, 2, 2.10, 77.5151, 1, 0.10685,
0.00000, 1, 1.35, 43.4219, 1, 0.0, 7.63836, 1, 4.50, 52.2082, 1, 2.06301,
0.00000, 1, 0.50, 36.3205, 2, 0.0, 7.42466, 2, 2.30, 25.9781, 1, 0.50959,
0.00000, 1, 4.00, 49.4411, 1, 0.65753, 0.00000, 1, 5.40, 57.9589, 1, 0.0,
6.93151, 1, 6.00, 65.5644, 1, 0.0, 7.23288, 2, 5.10, 72.3425, 1, 6.01096,
0.00000, 1, 4.50, 68.8548, 1, 0.33699, 0.00000, 1, 1.45, 50.4438, 2, 0.0,
6.47123, 2, 3.38, 48.2877, 1, 0.94795, 0.00000, 1, 3.00, 46.9479, 2,
2.91781, 0.00000, 2, 1.20, 33.6000, 2, 1.59726, 0.00000, 2, 7.30, 51.1644, 2,
0.84932, 0.00000, 2, 1.67, 47.7836, 1, 1.38356, 0.00000, 1, 4.00, 53.8795, 2,
3.81644, 0.00000, 2, 2.10, 38.7068, 2, 0.0, 7.06849, 1, 10.00, 69.3205, 2,
0.0, 7.04110, 2, 3.50, 66.0219, 1, 1.00274, 0.00000, 2, 1.10, 36.0329, 2,
0.0, 6.34795, 2, 0.40, 63.4603, 1, 1.18082, 0.00000, 1, 0.70, 48.8986, 2,
0.97534, 0.00000, 1, 5.00, 45.0575, 1, 2.16712, 0.00000, 1, 0.85, 57.6712, 2,
0.0, 6.85479, 1, 4.80, 45.2000, 1, 1.38356, 0.00000, 1, 1.20, 49.0438, 1,
1.71507, 0.00000, 2, 1.30, 51.4630, 1, 0.79452, 0.00000, 2, 5.80, 34.5479, 1,
0.0, 6.86301, 2, 6.00, 47.6438, 2, 0.0, 6.50411, 1, 3.00, 38.7233, 2,
0.42466, 0.00000, 2, 1.88, 54.0658, 1, 0.98630, 0.00000, 1, 2.60, 45.7397, 1,
0.0, 6.13699, 2, 2.70, 47.2822, 2, 3.80000, 0.00000, 2, 6.00, 62.6411, 1,
0.0, 6.48493, 1, 4.00, 62.0192, 2, 0.0, 6.96438, 2, 1.71, 41.0904, 2, 0.0,
6.78082, 2, 1.60, 50.2712, 2, 0.56164, 0.00000, 2, 1.50, 49.5288, 2,
2.67123, 0.00000, 1, 3.00, 70.8192, 1, 1.56712, 0.00000, 2, 0.90, 59.0712, 1,
2.07397, 0.00000, 2, 4.00, 53.9041, 1, 0.33973, 0.00000, 1, 2.80, 44.7342, 1,
3.37808, 0.00000, 2, 0.80, 22.1397, 1, 3.15068, 0.00000, 1, 0.70, 72.8575, 1,
0.0, 6.81096, 2, 0.90, 61.4521, 1, 3.20822, 0.00000, 2, 12.00, 61.2904, 1,
0.62740, 0.00000, 1, 5.78, 34.7507, 1, 1.64384, 0.00000, 1, 0.60, 67.4164, 2,
1.40822, 0.00000, 1, 12.00, 53.2493, 1, 0.0, 6.06575, 1, 4.00, 49.0082, 1,
1.66301, 0.00000, 2, 0.45, 56.7699, 1, 1.36986, 0.00000, 2, 1.30, 34.0247, 2,
5.46849, 0.00000, 1, 0.81, 34.3014, 2, 0.42740, 0.00000, 1, 3.20, 45.0712, 2,
1.13973, 0.00000, 2, 4.00, 54.7671, 2, 1.73699, 0.00000, 2, 4.77, 42.8548, 2,
0.0, 5.54521, 2, 2.20, 36.6301, 2, 0.85205, 0.00000, 1, 3.00, 43.2466, 1,
0.43014, 0.00000, 1, 3.00, 53.3562, 1, 1.20822, 0.00000, 2, 0.80, 35.3534, 1,
4.36164, 0.00000, 1, 4.00, 36.5233, 1, 0.52877, 0.00000, 2, 5.00, 52.7863, 1,
0.0, 6.51507, 1, 2.00, 24.4329, 2, 2.89863, 0.00000, 2, 3.85, 58.7178, 1,
0.0, 6.20274, 2, 0.76, 45.5479, 1, 1.21644, 0.00000, 2, 0.75, 43.3014, 2,
0.0, 6.00000, 2, 6.50, 51.4055, 2, 0.0, 6.25479, 1, 0.85, 38.9671, 2, 0.0,
6.49863, 1, 4.30, 68.2658, 1, 1.13699, 0.00000, 2, 2.10, 59.4493, 2,
1.69589, 0.00000, 1, 1.50, 30.0192, 1, 0.0, 6.41096, 2, 2.00, 22.1562, 2,
0.0, 6.02192, 1, 11.00, 54.7671, 1, 3.04932, 0.00000, 2, 4.88, 45.0384, 1,
0.0, 5.62740, 2, 5.20, 39.7589, 1, 0.72603, 0.00000, 1, 3.04, 41.3808, 1,
0.73425, 0.00000, 2, 8.00, 34.9671, 1, 1.47945, 0.00000, 2, 1.60, 46.3479, 1,
0.37808, 0.00000, 2, 1.10, 29.9233, 2, 0.0, 5.75890, 2, 3.00, 32.8740, 1,
1.48219, 0.00000, 2, 10.00, 39.5397, 2, 0.0, 5.88493, 1, 1.95, 55.4822, 1,
0.0, 1.80274, 1, 2.00, 32.3562, 1, 1.40548, 0.00000, 2, 3.70, 41.8027, 2,
0.0, 4.74795, 1, 2.90, 35.3452, 2, 0.0, 5.24658, 1, 1.80, 50.4795, 1,
0.29041, 0.00000, 1, 6.00, 61.3507, 2, 0.0, 5.83836, 1, 1.50, 67.3562, 1,
0.0, 5.32055, 2, 1.75, 53.8548, 2, 5.16712, 0.00000, 2, 5.00, 78.7315, 2,
0.0, 5.59178, 2, 0.63, 62.7233, 1, 0.0, 5.77808, 1, 1.15, 65.1507, 1,
0.53425, 0.00000, 2, 1.50, 34.8274, 1, 0.0, 2.22466, 1, 0.98, 33.8466, 2,
3.59726, 0.00000, 1, 5.00, 67.8822, 1, 0.0, 5.32329, 1, 5.50, 66.0712, 2,
1.78630, 0.00000, 2, 1.00, 55.0658, 2, 0.70411, 0.00000, 2, 10.00, 50.5123,
1, 0.0, 4.94795, 2, 5.00, 42.4055, 2, 0.0, 5.45479, 2, 3.75, 58.1068, 2,
4.32877, 0.00000, 1, 10.00, 26.0137, 1, 1.16164, 0.00000, 2, 3.00, 54.4685,
1, 0.0, 5.20274, 2, 8.00, 54.0630, 2, 0.0, 4.40822, 1, 1.64, 34.5589, 1,
1.41096, 0.00000, 1, 4.95, 58.5068, 1, 0.0, 4.92877, 2, 1.45, 63.9370, 1,
0.0, 5.42192, 2, 12.00, 49.8274, 2, 0.98904, 0.00000, 1, 2.05, 50.5562, 1,
0.36438, 0.00000, 1, 3.60, 40.4795, 2, 0.0, 4.38082, 1, 8.30, 61.7479, 2,
0.77260, 0.00000, 2, 0.45, 41.6712, 1, 4.90959, 0.00000, 2, 3.00, 25.5096, 1,
1.26849, 0.00000, 1, 4.40, 61.2000, 1, 0.58082, 0.00000, 2, 1.10, 53.1260, 1,
0.0, 4.95616, 1, 1.05, 40.4658, 1, 0.0, 5.12329, 1, 1.71, 60.3068, 1, 0.0,
4.74795, 1, 6.30, 48.7425, 2, 0.0, 4.90685, 2, 0.50, 46.7562, 2, 1.41918,
0.00000, 1, 5.10, 34.8932, 2, 0.44110, 0.00000, 1, 6.00, 33.3096, 1, 0.0,
4.29863, 2, 1.50, 35.7589, 1, 0.0, 4.63836, 2, 0.36, 49.8575, 1, 0.0,
4.81370, 1, 3.00, 57.3726, 2, 4.50137, 0.00000, 2, 1.24, 29.7726, 2,
3.92329, 0.00000, 2, 0.70, 51.8822, 2, 0.0, 4.86027, 2, 0.80, 65.3123, 2,
0.52603, 0.00000, 1, 1.00, 52.0658, 2, 2.10685, 0.00000, 2, 3.38, 60.9534, 2,
0.0, 4.24384, 1, 1.52, 32.6055, 2, 3.39178, 0.00000, 1, 2.20, 51.5123, 2,
0.0, 4.36164, 2, 2.10, 48.6548, 1, 0.0, 4.81918, 2, 1.40, 43.8438, 2],
(255, 6))
# Censoring indicator
censored = (melanoma_data[:,0] == 0).astype(int)
# Time
t = sum(melanoma_data[:,0:2],1)
# Treatment
treat = melanoma_data[:,2].astype(int)-1
# Breslow scale
breslow = melanoma_data[:,3]
# Age and sex
age = melanoma_data[:,4]
sex = melanoma_data[:,5].astype(int)-1
|