/usr/share/melting/NNFILES/dnadnade.nn is in melting 4.3.1+dfsg-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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/* dnadnade.nn */
/* contains the parameters for DNA/DNA dangling ends. */
/******************************************************************************/
/* This program is free software; you can redistribute it and/or modify */
/* it under the terms of the GNU General Public License as published by */
/* the Free Software Foundation; either version 2 of the License, or */
/* (at your option) any later version. */
/* This program is distributed in the hope that it will be useful, but */
/* WITHOUT ANY WARRANTY; without even the implied warranty of */
/* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU */
/* General Public License for more details. */
/* You should have received a copy of the GNU General Public License */
/* along with this program; if not, write to the Free Software */
/* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 */
/* USA */
/* Nicolas Le Novère and Marine Dumousseau */
/* EMBL-EBI, Wellcome-Trust Genome Campus */
/* Hinxton Cambridge, CB10 1SD, UK */
/* lenov@ebi.ac.uk */
/* IMPORTANT: the parameters appearing in litterature (and therefore in this */
/* file) are expressed in cal.mol-1, whereas the results output */
/* by MELTING are in SI, i.e. in J.mol-1 */
AA/-T 200.0 2.3
T-/AA 200.0 2.3
AC/-G -6300.0 -17.1
G-/CA -6300.0 -17.1
AG/-C -3700.0 -10.0
C-/GA -3700.0 -10.0
AT/-A -2900.0 -7.6
A-/TA -2900.0 -7.6
CA/-T 600.0 3.3
T-/AC 600.0 3.3
CC/-G -4400.0 -12.6
G-/CC -4400.0 -12.6
CG/-C -4000.0 -11.9
C-/GC -4000.0 -11.9
CT/-A -4100.0 -13.0
A-/TC -4100.0 -13.0
GA/-T -1100.0 -1.6
T-/AG -1100.0 -1.6
GC/-G -5100.0 -14.0
G-/CG -5100.0 -14.0
GG/-C -3900.0 -10.9
C-/GG -3900.0 -10.9
GT/-A -4200.0 -15.0
A-/TG -4200.0 -15.0
TA/-T -6900.0 -20.0
T-/AT -6900.0 -20.0
TC/-G -4000.0 -10.9
G-/CT -4000.0 -10.9
TG/-C -4900.0 -13.8
C-/GT -4900.0 -13.8
TT/-A -200.0 -0.5
A-/TT -200.0 -0.5
-A/AT -700.0 -0.8
TA/A- -700.0 -0.8
-C/AG -2100.0 -3.9
GA/C- -2100.0 -3.9
-G/AC -5900.0 -16.5
CA/G- -5900.0 -16.5
-T/AA -500.0 -1.1
AA/T- -500.0 -1.1
-A/CT 4400.0 14.9
TC/A- 4400.0 14.9
-C/CG -200.0 -0.1
GC/C- -200.0 -0.1
-G/CC -2600.0 -7.4
CC/G- -2600.0 -7.4
-T/CA 4700.0 14.2
AC/T- 4700.0 14.2
-A/GT -1600.0 -3.6
TG/A- -1600.0 -3.6
-C/GG -3900.0 -11.2
GG/C- -3900.0 -11.2
-G/GC -3200.0 -10.4
CG/G- -3200.0 -10.4
-T/GA -4100.0 -13.1
AG/T- -4100.0 -13.1
-A/TT 2900.0 10.4
TT/A- 2900.0 10.4
-C/TG -4400.0 -13.1
GT/C- -4400.0 -13.1
-G/TC -5200.0 -15.0
CT/G- -5200.0 -15.0
-T/TA -3800.0 -12.6
AT/T- -3800.0 -12.6
REF: Bommarito et al. (2000). Nuc Acids Res 28: 1929-1934
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