/usr/include/trilinos/Zoltan2_Problem.hpp is in libtrilinos-zoltan2-dev 12.4.2-2.
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//
// ***********************************************************************
//
// Zoltan2: A package of combinatorial algorithms for scientific computing
// Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Karen Devine (kddevin@sandia.gov)
// Erik Boman (egboman@sandia.gov)
// Siva Rajamanickam (srajama@sandia.gov)
//
// ***********************************************************************
//
// @HEADER
/*! \file Zoltan2_Problem.hpp
\brief Defines the Problem base class.
*/
#ifndef _ZOLTAN2_PROBLEM_HPP_
#define _ZOLTAN2_PROBLEM_HPP_
#include <Zoltan2_Standards.hpp>
#include <Zoltan2_GraphModel.hpp>
#include <Zoltan2_IdentifierModel.hpp>
#include <Zoltan2_CoordinateModel.hpp>
#include <Zoltan2_Algorithm.hpp>
#include <Zoltan2_TimerManager.hpp>
namespace Zoltan2{
////////////////////////////////////////////////////////////////////////
//! \brief Problem base class from which other classes (PartitioningProblem,
//! ColoringProblem, OrderingProblem, MatchingProblem, etc.) derive.
template<typename Adapter>
class Problem {
public:
#ifdef HAVE_ZOLTAN2_MPI
/*! \brief Constructor for MPI builds
*/
Problem(const Adapter *input, ParameterList *params, MPI_Comm comm):
inputAdapter_(rcp(input,false)),
baseInputAdapter_(rcp(dynamic_cast<const base_adapter_t *>(input),
false)),
graphModel_(), identifierModel_(), baseModel_(), algorithm_(),
params_(), comm_(), env_(), envConst_(), timer_()
{
RCP<Teuchos::OpaqueWrapper<MPI_Comm> > wrapper =
Teuchos::opaqueWrapper(comm);
comm_ = rcp<const Comm<int> >(new Teuchos::MpiComm<int>(wrapper));
setupProblemEnvironment(params);
}
#endif
/*! \brief Constructor where communicator is Teuchos default.
*/
Problem(const Adapter *input, ParameterList *params):
inputAdapter_(rcp(input,false)),
baseInputAdapter_(rcp(dynamic_cast<const base_adapter_t *>(input),
false)),
graphModel_(), identifierModel_(), baseModel_(), algorithm_(),
params_(), comm_(), env_(), envConst_(), timer_()
{
comm_ = DefaultComm<int>::getComm();
setupProblemEnvironment(params);
}
/*! \brief Constructor where Teuchos communicator is specified
*/
Problem(const Adapter *input, ParameterList *params,
RCP<const Comm<int> > &comm):
inputAdapter_(rcp(input,false)),
baseInputAdapter_(rcp(dynamic_cast<const base_adapter_t *>(input),
false)),
graphModel_(), identifierModel_(), baseModel_(), algorithm_(),
params_(), comm_(comm), env_(), envConst_(), timer_()
{
setupProblemEnvironment(params);
}
/*! \brief Destructor
*/
virtual ~Problem() {};
/*! \brief Return the communicator used by the problem
*/
RCP<const Comm<int> > getComm() { return comm_; }
/*! \brief Reset the list of parameters
*/
void resetParameters(ParameterList *params);
/*! \brief Method that creates a solution.
*/
virtual void solve(bool updateInputData) = 0;
/*! \brief Return the communicator passed to the problem
*/
/*! \brief If timer data was collected, print out global data.
*
* If the parameter "timer_output_stream" or "timer_output_file"
* was set, then timing statistics are available and will be
* printed out to the requested output stream with this call.
*
* All processes in the application must call this, even if
* they were not all in the problem communicator.
* All timers are reset back to zero after this call.
*
* Timer starts, stops and displays are ignored if Zoltan2
* is compiled with Z2_OMIT_ALL_ERROR_CHECKING.
*/
#ifdef Z2_OMIT_ALL_ERROR_CHECKING
void printTimers() const {return;}
#else
void printTimers() const
{
if (!timer_.is_null())
timer_->printAndResetToZero();
}
#endif
protected:
// The Problem is templated on the input adapter. We interact
// with the input adapter through the base class interface.
// The Model objects are also templated on the input adapter and
// are explicitly instantiated for each base input type (vector,
// graph, matrix, mesh, identifier list, and coordinate list).
typedef typename Adapter::base_adapter_t base_adapter_t;
RCP<const Adapter> inputAdapter_;
RCP<const base_adapter_t> baseInputAdapter_;
RCP<GraphModel<base_adapter_t> > graphModel_;
RCP<IdentifierModel<base_adapter_t> > identifierModel_;
RCP<CoordinateModel<base_adapter_t> > coordinateModel_;
// Algorithms are passed a base model class, and query
// the model through the base class interface (graph, hypergraph,
// identifiers, or coordinates).
RCP<const Model<base_adapter_t> > baseModel_;
// Every problem needs an algorithm, right?
RCP<Algorithm<Adapter> > algorithm_;
RCP<ParameterList> params_;
RCP<const Comm<int> > comm_;
// The Problem has a non const Environment object. This is because
// the Problem creates the Environment and may update it before
// finally calling the algorithm.
RCP<Environment> env_;
// The Problem needs a const version of the Environment. No other
// methods are permitted to change the Environment.
RCP<const Environment> envConst_;
// If the user requested timing, this is the TimerManager.
RCP<TimerManager> timer_;
private:
void setupProblemEnvironment(ParameterList *pl);
};
template <typename Adapter>
void Problem<Adapter>::setupProblemEnvironment(ParameterList *params)
{
try{
env_ = rcp(new Environment(*params, Teuchos::DefaultComm<int>::getComm()));
}
Z2_FORWARD_EXCEPTIONS
envConst_ = rcp_const_cast<const Environment>(env_);
ParameterList &processedParameters = env_->getParametersNonConst();
params_ = rcp<ParameterList>(&processedParameters, false);
#ifndef Z2_OMIT_ALL_PROFILING
ParameterList pl = *params_;
// Give a timer to the Environment if requested.
bool haveType=false, haveStream=false, haveFile=false;
int choice = MACRO_TIMERS; // default timer type
const Teuchos::ParameterEntry *pe = pl.getEntryPtr("timer_type");
if (pe){
choice = pe->getValue<int>(&choice);
haveType = true;
}
TimerType tt = static_cast<TimerType>(choice);
std::string fname;
pe = pl.getEntryPtr("timer_output_file");
if (pe){
haveFile = true;
fname = pe->getValue<std::string>(&fname);
std::ofstream *dbgFile = new std::ofstream;
if (comm_->getRank()==0){
// Using Teuchos::TimeMonitor, node 0 prints global timing info.
try{
dbgFile->open(fname.c_str(), std::ios::out|std::ios::trunc);
}
catch(std::exception &e){
throw std::runtime_error(e.what());
}
}
timer_ = rcp(new TimerManager(comm_, dbgFile, tt));
}
else{
choice = COUT_STREAM; // default output stream
pe = pl.getEntryPtr("timer_output_stream");
if (pe){
choice = pe->getValue<int>(&choice);
haveStream = true;
}
OSType outputStream = static_cast<OSType>(choice);
if (haveStream || haveType){
if (outputStream == COUT_STREAM)
timer_ = rcp(new TimerManager(comm_, &std::cout, tt));
else if (outputStream == CERR_STREAM)
timer_ = rcp(new TimerManager(comm_, &std::cerr, tt));
else if (outputStream == NULL_STREAM){
std::ofstream *of = NULL;
timer_ = rcp(new TimerManager(comm_, of, tt));
}
}
}
if (haveType || haveStream || haveFile)
env_->setTimer(timer_);
#endif
}
template <typename Adapter>
void Problem<Adapter>::resetParameters(ParameterList *params)
{
env_ = rcp(new Environment(*params, Teuchos::DefaultComm<int>::getComm()));
envConst_ = rcp_const_cast<const Environment>(env_);
ParameterList &processedParameters = env_->getParametersNonConst();
params_ = rcp<ParameterList>(&processedParameters, false);
// We assume the timing output parameters have not changed,
// and carry on with the same timer.
if (!timer_.is_null())
env_->setTimer(timer_);
}
} // namespace Zoltan2
#endif
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