This file is indexed.

/usr/include/trilinos/Teko_DiagnosticLinearOp.hpp is in libtrilinos-teko-dev 12.4.2-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
/*
// @HEADER
// 
// ***********************************************************************
// 
//      Teko: A package for block and physics based preconditioning
//                  Copyright 2010 Sandia Corporation 
//  
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//  
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//  
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//  
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//  
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission. 
//  
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING 
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//  
// Questions? Contact Eric C. Cyr (eccyr@sandia.gov)
// 
// ***********************************************************************
// 
// @HEADER

*/

/** \file Teko_DiagnosticLinearOp.hpp
  * 
  * File that implements the a linear operator for printing out
  * diagnostics.
  */

#ifndef __Teko_DiagnosticLinearOp_hpp__
#define __Teko_DiagnosticLinearOp_hpp__

#include <iostream>

#include "Teko_Utilities.hpp"
#include "Teko_ImplicitLinearOp.hpp"

#include "Teuchos_Time.hpp"

namespace Teko {

/** \brief This linear operator prints diagnostics about operator
 *         application and creation times. It is useful for debugging
 *         problems and determining bottle necks.
 */
class DiagnosticLinearOp : public ImplicitLinearOp {
public:
   /** \brief This constructor explicitly takes the linear operator
     *        that needs to be wrapped and a string for output that describes
     *        the diagnostics.
     */
   DiagnosticLinearOp(const Teuchos::RCP<std::ostream> & ostrm,const ModifiableLinearOp & A,const std::string & diagnosticString);

   /** \brief This constructor explicitly takes the linear operator
     *        that needs to be wrapped and a string for output that describes
     *        the diagnostics.
     */
   DiagnosticLinearOp(const Teuchos::RCP<std::ostream> & ostrm,const LinearOp & fwdOp,const ModifiableLinearOp & A,const std::string & diagnosticString);

   /** \brief Destructor prints out timing information about this operator.
     */
   virtual ~DiagnosticLinearOp();

   //! \name Inherited methods from Thyra::LinearOpBase
   //@{

   /** @brief Range space of this operator */
   virtual VectorSpace range() const { return wrapOpA_->range(); }

   /** @brief Domain space of this operator */
   virtual VectorSpace domain() const { return wrapOpA_->range(); }

   /** @brief Perform a matrix vector multiply with this operator. 
     *
     * The <code>apply</code> function takes one vector as input 
     * and applies the inverse \f$ LDU \f$ decomposition. The result
     * is returned in \f$y\f$. If this operator is reprsented as \f$M\f$ then
     * \f$ y = \alpha M x + \beta y \f$ (ignoring conjugation!).
     *
     * @param[in]     x 
     * @param[in,out] y 
     * @param[in]     alpha (default=1)
     * @param[in]     beta  (default=0)
     */
   virtual void implicitApply(const MultiVector & x, MultiVector & y,
              const double alpha = 1.0, const double beta = 0.0) const;
   //@}

   virtual void describe(Teuchos::FancyOStream & out_arg,
                         const Teuchos::EVerbosityLevel verbLevel) const
   { wrapOpA_->describe(out_arg,verbLevel); }

   int numApplications() const { return timer_.numCalls(); }
   double totalTime() const { return timer_.totalElapsedTime(); }

   ModifiableLinearOp getModifiableOp() const
   { return wrapOpA_; } 

   LinearOp getLinearOp() const
   { return wrapOpA_; } 
 
   void setForwardOp(const Teko::LinearOp & lo)
   { fwdOp_ = lo; }
 
   /* Get the residual norm.  Used purely for testing.
    */
   double getResidualNorm() const
   { return residualNorm_; }

protected:
   // fundamental operators to use
   Teuchos::RCP<std::ostream> outputStream_;
   ModifiableLinearOp wrapOpA_;      ///< inverse of \f$ S \f$
   Teko::LinearOp fwdOp_;      ///< inverse of \f$ S \f$
   std::string diagString_;

   mutable double residualNorm_; // for testing purposes
   mutable Teuchos::Time timer_;

private:
   // hide me!
   DiagnosticLinearOp();
   DiagnosticLinearOp(const DiagnosticLinearOp &);
};

/** \brief Constructor method for building <code>DiagnosticLinearOp</code>.
  *
  * Constructor method for building <code>DiagnosticLinearOp</code>.
  *
  * \param[in] os     Output stream to print diagnostics to
  * \param[in] A      Operator to be wrapped
  * \param[in] label  String for outputing with diagnostics
  *
  * \returns A linear operator that wrapping A that will print diagnostics
  *          on descruction.
  * 
  * \relates LU2x2InverseOp
  */
inline ModifiableLinearOp createDiagnosticLinearOp(const Teuchos::RCP<std::ostream> & os,const ModifiableLinearOp & A,const std::string & label)
{
   return Teuchos::rcp(new DiagnosticLinearOp(os,A,label));
}

/** \brief Constructor method for building <code>DiagnosticLinearOp</code>.
  *
  * Constructor method for building <code>DiagnosticLinearOp</code>.
  *
  * \param[in] os     Output stream to print diagnostics to
  * \param[in] fwdOp  Forward operator to compute residual with
  * \param[in] A      Operator to be wrapped
  * \param[in] label  String for outputing with diagnostics
  *
  * \returns A linear operator that wrapping A that will print diagnostics
  *          on descruction.
  * 
  * \relates LU2x2InverseOp
  */
inline ModifiableLinearOp createDiagnosticLinearOp(const Teuchos::RCP<std::ostream> & os,const Teko::LinearOp & fwdOp,const ModifiableLinearOp & A,const std::string & label)
{
   return Teuchos::rcp(new DiagnosticLinearOp(os,fwdOp,A,label));
}

} // end namespace Teko

#endif