This file is indexed.

/usr/include/trilinos/NOX_LAPACK_LinearSolver.H is in libtrilinos-nox-dev 12.4.2-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
// $Id$
// $Source$

//@HEADER
// ************************************************************************
//
//            NOX: An Object-Oriented Nonlinear Solver Package
//                 Copyright (2002) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Roger Pawlowski (rppawlo@sandia.gov) or
// Eric Phipps (etphipp@sandia.gov), Sandia National Laboratories.
// ************************************************************************
//  CVS Information
//  $Source$
//  $Author$
//  $Date$
//  $Revision$
// ************************************************************************
//@HEADER

#ifndef NOX_LAPACK_LINEARSOLVER_H
#define NOX_LAPACK_LINEARSOLVER_H

#include "Teuchos_BLAS.hpp"
#include "Teuchos_LAPACK.hpp"
#include "Teuchos_ScalarTraits.hpp"

#include "NOX_LAPACK_Matrix.H"

namespace NOX {

  namespace LAPACK {

    //! A simple linear solver for use by NOX::LAPACK::Group
    /*!
     * This class provides a simple linear solver class that stores a
     * NOX::LAPACK::Matrix and provides routines to apply the matrix
     * and solve it using BLAS and LAPACK routines.  It is templated
     * so that it can be used to solve both real and complex matrices.
     * It also stores an LU factorization of the matrix so repeated
     * solves are more efficient.  The group should signal that the
     * matrix has changed by calling reset().
     */
    template <typename T>
    class LinearSolver {

    public:

      //! Constructor
      LinearSolver(int n);

      //! Copy constructor
      LinearSolver(const LinearSolver<T>& s);

      //! Destructor
      ~LinearSolver();

      //! Assignment
      LinearSolver& operator=(const LinearSolver<T>& s);

      //! Return matrix
      Matrix<T>& getMatrix();

      //! Return matrix
      const Matrix<T>& getMatrix() const;

      //! Reset
      /*!
       * Resets the LU factorization indicating the matrix is updated.
       */
      void reset();

      //! Apply matrix
      /*!
       * Set \c trans to \c true to apply the transpose.  \c ncols is the
       * number of columns in \c input and \c output, which should be stored
       * column-wise.
       */
      void apply(bool trans, int ncols, const T* input, T* output) const;

      //! Solve inverse
      /*!
       * Set \c trans to \c true to solve the transpose.  \c ncols is the
       * number of columns in \c output, which should be stored column-
       * wise.  The right-hand-side is passed through \c output, which is
       * then overwritten with the result.
       */
      bool solve(bool trans, int ncols, T* output);

    protected:

      //! Matrix
      Matrix<T> mat;

      //! LU factorization of matrix
      Matrix<T> lu;

      //! Pivots
      std::vector<int> pivots;

      //! Is LU factorization valid
      bool isValidLU;

      //! BLAS wrappers
      Teuchos::BLAS<int,T> blas;

      //! LAPACK wrappers
      Teuchos::LAPACK<int,T> lapack;

    };

  } // namespace LAPACK

} // namespace NOX

template <typename T>
NOX::LAPACK::LinearSolver<T>::LinearSolver(int n) :
  mat(n,n),
  lu(n,n),
  pivots(n),
  isValidLU(false),
  blas(),
  lapack()
{
}

template <typename T>
NOX::LAPACK::LinearSolver<T>::LinearSolver(const NOX::LAPACK::LinearSolver<T>& s) :
  mat(s.mat),
  lu(s.lu),
  pivots(s.pivots),
  isValidLU(s.isValidLU),
  blas(),
  lapack()
{
}

template <typename T>
NOX::LAPACK::LinearSolver<T>::~LinearSolver()
{
}

template <typename T>
NOX::LAPACK::LinearSolver<T>&
NOX::LAPACK::LinearSolver<T>::operator=(const NOX::LAPACK::LinearSolver<T>& s)
{
  if (this != &s) {
    mat = s.mat;
    lu = s.lu;
    pivots = s.pivots;
    isValidLU = s.isValidLU;
  }

  return *this;
}

template <typename T>
NOX::LAPACK::Matrix<T>&
NOX::LAPACK::LinearSolver<T>::getMatrix()
{
  return mat;
}

template <typename T>
const NOX::LAPACK::Matrix<T>&
NOX::LAPACK::LinearSolver<T>::getMatrix() const
{
  return mat;
}

template <typename T>
void
NOX::LAPACK::LinearSolver<T>::reset()
{
  isValidLU = false;
}

template <typename T>
void
NOX::LAPACK::LinearSolver<T>::apply(bool trans, int ncols, const T* input,
                  T* output) const
{
  Teuchos::ETransp tr = Teuchos::NO_TRANS;
  if (trans) {
    if (Teuchos::ScalarTraits<T>::isComplex)
      tr = Teuchos::CONJ_TRANS;
    else
      tr = Teuchos::TRANS;
  }

  int n = mat.numRows();
  blas.GEMM(tr, Teuchos::NO_TRANS, n, ncols, n, 1.0, &mat(0,0), n,
        input, n, 0.0, output, n);
}

template <typename T>
bool
NOX::LAPACK::LinearSolver<T>::solve(bool trans, int ncols, T* output)
{
  int info;
  int n = mat.numRows();

  // Compute LU factorization if necessary
  if (!isValidLU) {
    lu = mat;
    lapack.GETRF(n, n, &lu(0,0), n, &pivots[0], &info);
    if (info != 0)
      return false;
    isValidLU = true;
  }

  // Solve using LU factorization
  char tr = 'N';
  if (trans) {
     if (Teuchos::ScalarTraits<T>::isComplex)
       tr = 'C';
     else
       tr = 'T';
  }
  lapack.GETRS(tr, n, ncols, &lu(0,0), n, &pivots[0], output, n, &info);

  if (info != 0)
    return false;
  return true;
}

#endif