This file is indexed.

/usr/include/trilinos/LOCA_MultiContinuation_AbstractGroup.H is in libtrilinos-nox-dev 12.4.2-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
// $Id$
// $Source$

//@HEADER
// ************************************************************************
//
//            LOCA: Library of Continuation Algorithms Package
//                 Copyright (2005) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Roger Pawlowski (rppawlo@sandia.gov) or
// Eric Phipps (etphipp@sandia.gov), Sandia National Laboratories.
// ************************************************************************
//  CVS Information
//  $Source$
//  $Author$
//  $Date$
//  $Revision$
// ************************************************************************
//@HEADER

#ifndef LOCA_MULTICONTINUATION_ABSTRACTGROUP_H
#define LOCA_MULTICONTINUATION_ABSTRACTGROUP_H

#include "NOX_Abstract_Group.H" // base class
#include "NOX_Abstract_MultiVector.H"
#include "LOCA_Abstract_Iterator.H"
#include <vector>
#include <string>

namespace LOCA {
  class ParameterVector;
}

namespace LOCA {

  //! Groups and vectors for multi-parameter continuation
  namespace MultiContinuation {

    /*!
     * \brief %LOCA abstract interface for continuation, derived from the
     * NOX::Abstract::Group.  This abstract class provides
     * the interface necessary to perform continuation, i.e., compute
     * families of solutions to \f$ F(x,p) = 0 \f$.
    */
    /*!
     * Concrete implemenations of this interface must provide implementations
     * of all of the methods in the NOX::Abstract::Group interface as well as
     * the additional interface defined here.
    */

    class AbstractGroup : public virtual NOX::Abstract::Group {

    public:

      //! Default constructor.
      AbstractGroup() {}

      //! Destructor.
      virtual ~AbstractGroup() {}

      /*!
       * @name Pure virtual methods
       * These methods must be defined by any concrete implementation
       */
      //@{

      //! Copy the group (replaces operator = )
      virtual void copy(const NOX::Abstract::Group& source) = 0;

      //! Set parameters indexed by (integer) paramIDs
      virtual void setParamsMulti(const std::vector<int>& paramIDs,
                  const NOX::Abstract::MultiVector::DenseMatrix& vals) = 0;

      //! Set the parameter vector in the group to p (pVector = p).
      virtual void setParams(const LOCA::ParameterVector& p) = 0;

       //! Set parameter indexed by (integer) paramID
      virtual void setParam(int paramID, double val) = 0;

      //! Set parameter indexed by (std::string) paramID
      virtual void setParam(std::string paramID, double val) = 0;

      //! Return a const reference to the ParameterVector owned by the group.
      virtual const LOCA::ParameterVector& getParams() const = 0;

      //! Return copy of parameter indexed by (integer) paramID
      virtual double getParam(int paramID) const = 0;

      //! Return copy of parameter indexed by (std::string) paramID
      virtual double getParam(std::string paramID) const = 0;

      /*!
       * Compute \f$\partial F/\partial p\f$ for each parameter \f$p\f$
       * indexed by paramIDs.  The first column of \em dfdp holds F,
       * which is valid if \em isValidF is true.  Otherwise F must be
       * computed.
       */
      virtual NOX::Abstract::Group::ReturnType
      computeDfDpMulti(const std::vector<int>& paramIDs,
               NOX::Abstract::MultiVector& dfdp,
               bool isValidF) = 0;

      //@}


      /*!
       * @name Virtual methods with default implementations
       * These methods should be overloaded in a concrete implementation
       * if more appropriate/efficient approaches are available.
       */
      //@{

      //! Perform any preprocessing before a continuation step starts.
      /*!
       * The \c stepStatus argument indicates whether the previous step was
       * successful.  The default implementation to empty.
       */
      virtual void
      preProcessContinuationStep(
                 LOCA::Abstract::Iterator::StepStatus stepStatus);

      //! Perform any postprocessing after a continuation step finishes.
      /*!
       * The \c stepStatus argument indicates whether the step was
       * successful.  The default implementation to empty.
       */
      virtual void
      postProcessContinuationStep(
                 LOCA::Abstract::Iterator::StepStatus stepStatus);

      //! Projects solution to a few scalars for multiparameter continuation
      /*!
       * This method is called every time a solution is saved by the
       * multiparameter continuation code MF for later visualization
       * and should project the solution vector down to a few scalars.
       * The array \c px will be preallocated to the proper length
       * given by projectToDrawDimension().
       *
       * The default implementation is the max norm of the vector.
       */
      virtual void projectToDraw(const NOX::Abstract::Vector& x,
                 double *px) const;

      //! Returns the dimension of the project to draw array
      /*!
       * The default implementation is to return 1 since the default
       * projection is the max norm of the vector (a scalar).
       */
      virtual int projectToDrawDimension() const;

      //! Compute a scaled dot product
      /*!
       * The default implementation here just computes a.dot(b) but should
       * be overloaded for any problem that his difficult scaling.
       */
      virtual double
      computeScaledDotProduct(const NOX::Abstract::Vector& a,
                  const NOX::Abstract::Vector& b) const;

      //@}

      /*!
       * @name Virtual methods with empty or trivial implementations
       * These methods should be overloaded in a concrete implementation
       * but their implementation is not critical to the rest of %LOCA and
       * therefore have empty or trivial implementations.
       */
      //@{

      //! Function to print out solution and parameter after successful step
      /*!
       * Empty default definition.
       */
      virtual void printSolution(const double conParam) const {};

      //! Function to print out a vector and parameter after successful step
      /*!
       * Empty default definition.
       */
      virtual void printSolution(const NOX::Abstract::Vector& x_,
                                 const double conParam) const  {}

      //! Scales a vector using scaling vector
      /*!
       * The default definition here is to do nothing, i.e., no scaling
       */
      virtual void
      scaleVector(NOX::Abstract::Vector& x) const;

      //@}

      //! Bring NOX::Abstract::Group::operator=() into scope
      using NOX::Abstract::Group::operator=;

    };
  } // namespace MultiContinuation
} // namespace LOCA

#endif