/usr/include/trilinos/ml_ElementByElement_SingleElement.h is in libtrilinos-ml-dev 12.4.2-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 | /* ******************************************************************** */
/* See the file COPYRIGHT for a complete copyright notice, contact */
/* person and disclaimer. */
/* ******************************************************************** */
#ifndef ML_ELEMENT_BY_ELEMENT_SINGLE_ELEMENT_H
#define ML_ELEMENT_BY_ELEMENT_SINGLE_ELEMENT_H
#include "ml_include.h"
#ifdef HAVE_ML_EPETRA
#ifdef HAVE_MPI
#include "Epetra_MpiComm.h"
#else
#include "Epetra_SerialComm.h"
#endif
#include "Epetra_Operator.h"
#include "Epetra_BlockMap.h"
#include "Epetra_Map.h"
#include "Epetra_Vector.h"
#include "Epetra_MultiVector.h"
#include "Epetra_FECrsGraph.h"
#include <vector>
#include "ml_epetra.h"
namespace ML_Epetra {
class ElementByElement_SingleElement: public Epetra_Operator
{
public:
ElementByElement_SingleElement(Epetra_Comm& Comm,
const int NumMyFEs,
const int NumVerticesPerFE,
int* MyFEs,
const int NumPDEEqns,
Epetra_SerialDenseMatrix* FEMatrix,
const int NumMyBoundaryRows,
int* MyBoundaryRows,
const double* MyBoundaryValues,
const Epetra_Map& GraphMap,
const int MaxEntriesPerGraphRow = 0) :
NumMyFEs_(NumMyFEs),
NumVerticesPerFE_(NumVerticesPerFE),
MyFEs_(MyFEs),
NumPDEEqns_(NumPDEEqns),
FEMatrix_(FEMatrix),
NumMyBoundaryRows_(NumMyBoundaryRows),
MyBoundaryRows_(MyBoundaryRows),
MyBoundaryValues_(MyBoundaryValues),
Comm_(Comm),
Graph_(0)
{
// build the graph using GraphMap
Graph_ = new Epetra_FECrsGraph(Copy, GraphMap, MaxEntriesPerGraphRow);
for (int ie = 0; ie < NumMyFEs; ++ie)
{
const int* ptr = &(MyFEs_[ie * NumVerticesPerFE]);
Graph_->InsertGlobalIndices(NumVerticesPerFE, ptr,
NumVerticesPerFE, ptr);
}
Graph_->GlobalAssemble();
// convert MyFEs into local column map ordering
for (int ie = 0; ie < NumMyFEs; ++ie)
{
int* ptr = &(MyFEs_[ie * NumVerticesPerFE]);
for (int i = 0; i < NumVerticesPerFE; ++i)
{
ptr[i] = Graph_->ColMap().LID(ptr[i]);
assert (ptr[i] != -1);
}
}
// build the map for the operator, which is the "extended"
// version of GraphMap
std::vector<int> MyGlobalElements2(Graph_->ColMap().NumMyElements() * NumPDEEqns);
int* MyGlobalElements = Graph_->RowMap().MyGlobalElements();
int NumMyElements = Graph_->RowMap().NumMyElements();
for (int i = 0; i < NumMyElements; ++i)
for (int j = 0; j < NumPDEEqns; ++j)
MyGlobalElements2[i * NumPDEEqns + j] = MyGlobalElements[i] * NumPDEEqns + j;
OperatorMap_ = new Epetra_Map(-1, NumMyElements * NumPDEEqns,
&MyGlobalElements2[0], 0, Comm_);
// expand the column map as well
MyGlobalElements = Graph_->ColMap().MyGlobalElements();
NumMyElements = Graph_->ColMap().NumMyElements();
for (int i = 0; i < NumMyElements; ++i)
for (int j = 0; j < NumPDEEqns; ++j)
MyGlobalElements2[i * NumPDEEqns + j] = MyGlobalElements[i] * NumPDEEqns + j;
OperatorColMap_ = new Epetra_Map(-1, NumMyElements * NumPDEEqns,
&MyGlobalElements2[0], 0, Comm_);
ColImporter_ = new Epetra_Import(*OperatorColMap_, *OperatorMap_);
// memory allocation for element-by-element multiplication
DenseX.Reshape(NumPDEEqns * NumVerticesPerFE, NumMyFEs_);
DenseY.Reshape(NumPDEEqns * NumVerticesPerFE, NumMyFEs_);
// now arrange the boundary conditions. I make the assumption that
// each BC row has been specified on a different processor.
MyGlobalElements2.resize(NumMyBoundaryRows_);
for (int i = 0; i < NumMyBoundaryRows_; ++i)
MyGlobalElements2[i] = MyBoundaryRows_[i];
Epetra_Map BoundaryMap(-1, NumMyBoundaryRows_, &MyGlobalElements2[0], 0, Comm_);
Epetra_Vector BoundaryVector(BoundaryMap);
for (int i = 0; i < NumMyBoundaryRows_; ++i)
BoundaryVector[i] = MyBoundaryValues_[i];
// now build a map containing the boundaries for ghost nodes only
int count = 0;
for (int i = 0; i < NumMyBoundaryRows_; ++i)
{
if (GraphMap.LID(MyBoundaryRows_[i]) == -1)
MyGlobalElements2[++count] = MyBoundaryRows_[i];
}
ColBoundaryMap_ = new Epetra_Map(-1, count, &MyGlobalElements2[0], 0, Comm_);
ColBoundaryVector_ = new Epetra_Vector(*ColBoundaryMap_);
Epetra_Import Importer(*ColBoundaryMap_, BoundaryMap);
ColBoundaryVector_->Import(BoundaryVector, Importer, Insert);
ColBoundaryImporter_ = new Epetra_Import(*OperatorColMap_, *ColBoundaryMap_);
for (int i = 0; i < NumMyBoundaryRows_; ++i)
MyBoundaryRows_[i] = OperatorColMap_->LID(MyBoundaryRows_[i]);
}
~ElementByElement_SingleElement()
{
delete Graph_;
delete OperatorMap_;
delete OperatorColMap_;
delete ColImporter_;
delete ColBoundaryMap_;
delete ColBoundaryVector_;
delete ColBoundaryImporter_;
}
const Epetra_CrsGraph& Graph() const
{
return(*Graph_);
}
int SetUseTranspose(bool UseTranspose)
{
if (UseTranspose)
ML_CHK_ERR(-1);
return(0);
}
int Apply(const Epetra_MultiVector& X, Epetra_MultiVector& Y) const
{
assert (X.NumVectors() == 1); // FIXME
// import ghost nodes
Epetra_MultiVector ColX(*OperatorColMap_, X.NumVectors());
ML_CHK_ERR(ColX.Import(X, *ColImporter_, Insert));
// fix boundary conditions
ML_CHK_ERR(SetMyBoundaryRows(ColX));
ML_CHK_ERR(ColX.Import(*ColBoundaryVector_, *ColBoundaryImporter_, Insert));
// now redistribute the vector into Dense
for (int ie = 0; ie < NumMyFEs_; ++ie)
{
const int* ptr = &(MyFEs_[ie * NumVerticesPerFE_]);
for (int i = 0; i < NumVerticesPerFE_; ++i)
{
for (int j = 0; j < NumPDEEqns_; ++j)
DenseX(i * NumPDEEqns_ + j, ie) = ColX[0][ptr[i] * NumPDEEqns_ + j];
}
}
DenseY.Multiply('N', 'N', 1.0, *FEMatrix_, DenseX, 0.0);
ColX.PutScalar(0.0);
// put values back into Y
for (int ie = 0; ie < NumMyFEs_; ++ie)
{
const int* ptr = &(MyFEs_[ie * NumVerticesPerFE_]);
for (int i = 0; i < NumVerticesPerFE_; ++i)
{
for (int j = 0; j < NumPDEEqns_; ++j)
ColX[0][ptr[i] * NumPDEEqns_ + j] += DenseY(i * NumPDEEqns_ + j, ie);
}
}
Y.PutScalar(0.0);
ML_CHK_ERR(Y.Export(ColX, *ColImporter_, Add));
ML_CHK_ERR(ResetMyBoundaryRows(Y));
return(0);
}
int ApplyInverse(const Epetra_MultiVector& X, Epetra_MultiVector& Y) const
{
ML_CHK_ERR(-1);
}
double NormInf() const
{
return(-1.0);
}
const char* Label() const
{
return("ML_Epetra::ElementByElementMatrix");
}
bool UseTranspose() const
{
return(false);
}
bool HasNormInf() const
{
return(false);
}
const Epetra_Comm& Comm() const
{
return(Comm_);
}
const Epetra_Map& OperatorDomainMap() const
{
return(*OperatorMap_);
}
const Epetra_Map& OperatorRangeMap() const
{
return(*OperatorMap_);
}
const Epetra_BlockMap& Map() const
{
return(*OperatorMap_);
}
int SetMyBoundaryRows(Epetra_MultiVector& Y) const
{
assert (Y.NumVectors() == 1);
for (int i = 0; i < NumMyBoundaryRows_; ++i)
Y[0][MyBoundaryRows_[i]] = MyBoundaryValues_[i];
return(0);
}
int ResetMyBoundaryRows(Epetra_MultiVector& Y) const
{
assert (Y.NumVectors() == 1);
for (int i = 0; i < NumMyBoundaryRows_; ++i)
Y[0][MyBoundaryRows_[i]] = 0.0;
return(0);
}
private:
const int NumMyFEs_;
const int NumVerticesPerFE_;
int* MyFEs_;
const int NumPDEEqns_;
const Epetra_SerialDenseMatrix* FEMatrix_;
const int NumMyBoundaryRows_;
int* MyBoundaryRows_;
const double* MyBoundaryValues_;
const Epetra_Comm& Comm_;
Epetra_FECrsGraph* Graph_;
Epetra_Map* OperatorMap_;
Epetra_Map* OperatorColMap_;
Epetra_Import* ColImporter_;
mutable Epetra_SerialDenseMatrix DenseX, DenseY;
Epetra_Map* ColBoundaryMap_;
Epetra_Vector* ColBoundaryVector_;
Epetra_Import* ColBoundaryImporter_;
}; // class ElementByElementMatrix
} // namespace ML_Epetra
#endif // HAVE_ML_EPETRA
#endif // ML_ELEMENT_BY_ELEMENT_SINGLE_ELEMENT_H
|