This file is indexed.

/usr/include/trilinos/Kokkos_Atomic.hpp is in libtrilinos-kokkos-dev 12.4.2-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
/*
//@HEADER
// ************************************************************************
// 
//                        Kokkos v. 2.0
//              Copyright (2014) Sandia Corporation
// 
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
// 
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact  H. Carter Edwards (hcedwar@sandia.gov)
// 
// ************************************************************************
//@HEADER
*/

/// \file Kokkos_Atomic.hpp
/// \brief Atomic functions
///
/// This header file defines prototypes for the following atomic functions:
///   - exchange
///   - compare and exchange
///   - add
///
/// Supported types include:
///   - signed and unsigned 4 and 8 byte integers
///   - float
///   - double
///
/// They are implemented through GCC compatible intrinsics, OpenMP
/// directives and native CUDA intrinsics.
///
/// Including this header file requires one of the following
/// compilers:
///   - NVCC (for CUDA device code only)
///   - GCC (for host code only)
///   - Intel (for host code only)
///   - A compiler that supports OpenMP 3.1 (for host code only)

#ifndef KOKKOS_ATOMIC_HPP
#define KOKKOS_ATOMIC_HPP

#include <Kokkos_Macros.hpp>
#include <Kokkos_HostSpace.hpp>
#include <impl/Kokkos_Traits.hpp>

//----------------------------------------------------------------------------
#if defined(_WIN32)
#define KOKKOS_ATOMICS_USE_WINDOWS
#else
#if defined( __CUDA_ARCH__ ) && defined( KOKKOS_HAVE_CUDA )

// Compiling NVIDIA device code, must use Cuda atomics:

#define KOKKOS_ATOMICS_USE_CUDA

#elif ! defined( KOKKOS_ATOMICS_USE_GCC ) && \
      ! defined( KOKKOS_ATOMICS_USE_INTEL ) && \
      ! defined( KOKKOS_ATOMICS_USE_OMP31 )

// Compiling for non-Cuda atomic implementation has not been pre-selected.
// Choose the best implementation for the detected compiler.
// Preference: GCC, INTEL, OMP31

#if defined( KOKKOS_COMPILER_GNU ) || \
    defined( KOKKOS_COMPILER_CLANG ) || \
    ( defined ( KOKKOS_COMPILER_NVCC ) && defined ( __GNUC__ ) )

#define KOKKOS_ATOMICS_USE_GCC

#elif defined( KOKKOS_COMPILER_INTEL ) || \
      defined( KOKKOS_COMPILER_CRAYC )

#define KOKKOS_ATOMICS_USE_INTEL

#elif defined( _OPENMP ) && ( 201107 <= _OPENMP )

#define KOKKOS_ATOMICS_USE_OMP31

#else

#error "KOKKOS_ATOMICS_USE : Unsupported compiler"

#endif

#endif /* Not pre-selected atomic implementation */
#endif

//----------------------------------------------------------------------------

// Forward decalaration of functions supporting arbitrary sized atomics
// This is necessary since Kokkos_Atomic.hpp is internally included very early
// through Kokkos_HostSpace.hpp as well as the allocation tracker.
#ifdef KOKKOS_HAVE_CUDA
namespace Kokkos {
namespace Impl {
/// \brief Aquire a lock for the address
///
/// This function tries to aquire the lock for the hash value derived
/// from the provided ptr. If the lock is successfully aquired the
/// function returns true. Otherwise it returns false.
__device__ inline
bool lock_address_cuda_space(void* ptr);

/// \brief Release lock for the address
///
/// This function releases the lock for the hash value derived
/// from the provided ptr. This function should only be called
/// after previously successfully aquiring a lock with
/// lock_address.
__device__ inline
void unlock_address_cuda_space(void* ptr);
}
}
#endif


namespace Kokkos {
template <typename T>
KOKKOS_INLINE_FUNCTION
void atomic_add(volatile T * const dest, const T src);

// Atomic increment
template<typename T>
KOKKOS_INLINE_FUNCTION
void atomic_increment(volatile T* a);

template<typename T>
KOKKOS_INLINE_FUNCTION
void atomic_decrement(volatile T* a);
}

#if ! defined(_WIN32)
#include<impl/Kokkos_Atomic_Assembly_X86.hpp>
#endif

namespace Kokkos {


inline
const char * atomic_query_version()
{
#if defined( KOKKOS_ATOMICS_USE_CUDA )
  return "KOKKOS_ATOMICS_USE_CUDA" ;
#elif defined( KOKKOS_ATOMICS_USE_GCC )
  return "KOKKOS_ATOMICS_USE_GCC" ;
#elif defined( KOKKOS_ATOMICS_USE_INTEL )
  return "KOKKOS_ATOMICS_USE_INTEL" ;
#elif defined( KOKKOS_ATOMICS_USE_OMP31 )
  return "KOKKOS_ATOMICS_USE_OMP31" ;
#elif defined( KOKKOS_ATOMICS_USE_WINDOWS )
  return "KOKKOS_ATOMICS_USE_WINDOWS";
#endif
}

} // namespace Kokkos

#ifdef _WIN32
#include "impl/Kokkos_Atomic_Windows.hpp"
#else
//#include "impl/Kokkos_Atomic_Assembly_X86.hpp"

//----------------------------------------------------------------------------
// Atomic exchange
//
// template< typename T >
// T atomic_exchange( volatile T* const dest , const T val )
// { T tmp = *dest ; *dest = val ; return tmp ; }

#include "impl/Kokkos_Atomic_Exchange.hpp"

//----------------------------------------------------------------------------
// Atomic compare-and-exchange
//
// template<class T>
// bool atomic_compare_exchange_strong(volatile T* const dest, const T compare, const T val)
// { bool equal = compare == *dest ; if ( equal ) { *dest = val ; } return equal ; }

#include "impl/Kokkos_Atomic_Compare_Exchange_Strong.hpp"

//----------------------------------------------------------------------------
// Atomic fetch and add
//
// template<class T>
// T atomic_fetch_add(volatile T* const dest, const T val)
// { T tmp = *dest ; *dest += val ; return tmp ; }

#include "impl/Kokkos_Atomic_Fetch_Add.hpp"

//----------------------------------------------------------------------------
// Atomic fetch and sub
//
// template<class T>
// T atomic_fetch_sub(volatile T* const dest, const T val)
// { T tmp = *dest ; *dest -= val ; return tmp ; }

#include "impl/Kokkos_Atomic_Fetch_Sub.hpp"

//----------------------------------------------------------------------------
// Atomic fetch and or
//
// template<class T>
// T atomic_fetch_or(volatile T* const dest, const T val)
// { T tmp = *dest ; *dest = tmp | val ; return tmp ; }

#include "impl/Kokkos_Atomic_Fetch_Or.hpp"

//----------------------------------------------------------------------------
// Atomic fetch and and
//
// template<class T>
// T atomic_fetch_and(volatile T* const dest, const T val)
// { T tmp = *dest ; *dest = tmp & val ; return tmp ; }

#include "impl/Kokkos_Atomic_Fetch_And.hpp"
#endif /*Not _WIN32*/

//----------------------------------------------------------------------------
// Memory fence
//
// All loads and stores from this thread will be globally consistent before continuing
//
// void memory_fence() {...};
#include "impl/Kokkos_Memory_Fence.hpp"

//----------------------------------------------------------------------------
// Provide volatile_load and safe_load
//
// T volatile_load(T const volatile * const ptr);
//
// T const& safe_load(T const * const ptr);
// XEON PHI
// T safe_load(T const * const ptr

#include "impl/Kokkos_Volatile_Load.hpp"

#ifndef _WIN32
#include "impl/Kokkos_Atomic_Generic.hpp"
#endif
//----------------------------------------------------------------------------
// This atomic-style macro should be an inlined function, not a macro

#if defined( KOKKOS_COMPILER_GNU ) && !defined(__PGIC__)

  #define KOKKOS_NONTEMPORAL_PREFETCH_LOAD(addr) __builtin_prefetch(addr,0,0)
  #define KOKKOS_NONTEMPORAL_PREFETCH_STORE(addr) __builtin_prefetch(addr,1,0)

#else

  #define KOKKOS_NONTEMPORAL_PREFETCH_LOAD(addr) ((void)0)
  #define KOKKOS_NONTEMPORAL_PREFETCH_STORE(addr) ((void)0)

#endif

//----------------------------------------------------------------------------

#endif /* KOKKOS_ATOMIC_HPP */