This file is indexed.

/usr/include/trilinos/Amesos2_TpetraMultiVecAdapter_def.hpp is in libtrilinos-amesos2-dev 12.4.2-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
// @HEADER
//
// ***********************************************************************
//
//           Amesos2: Templated Direct Sparse Solver Package
//                  Copyright 2011 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ***********************************************************************
//
// @HEADER

/**
  \file   Amesos2_TpetraMultiVecAdapter_def.hpp
  \author Eric T Bavier <etbavier@sandia.gov>
  \date   Wed May 26 19:48:32 CDT 2010

  \brief  Amesos2::MultiVecAdapter specialization for the
          Tpetra::MultiVector class.
*/

#ifndef AMESOS2_TPETRA_MULTIVEC_ADAPTER_DEF_HPP
#define AMESOS2_TPETRA_MULTIVEC_ADAPTER_DEF_HPP

#include "Amesos2_TpetraMultiVecAdapter_decl.hpp"


namespace Amesos2 {

  using Tpetra::MultiVector;

  template <typename Scalar, typename LocalOrdinal, typename GlobalOrdinal, class Node >
  MultiVecAdapter<
    MultiVector<Scalar,
                LocalOrdinal,
                GlobalOrdinal,
                Node> >::MultiVecAdapter( const Teuchos::RCP<multivec_t>& m )
  : mv_(m)
  {}


  template <typename Scalar, typename LocalOrdinal, typename GlobalOrdinal, class Node >
  void
  MultiVecAdapter<
    MultiVector<Scalar,
                LocalOrdinal,
                GlobalOrdinal,
                Node> >::get1dCopy(const Teuchos::ArrayView<scalar_t>& av,
                                   size_t lda,
                                   Teuchos::Ptr<
                                     const Tpetra::Map<LocalOrdinal,
                                                       GlobalOrdinal,
                                                       Node> > distribution_map ) const
  {
    using Teuchos::as;
    using Teuchos::RCP;
    typedef Tpetra::Map<LocalOrdinal, GlobalOrdinal, Node> map_type;
    const size_t num_vecs = getGlobalNumVectors ();

    TEUCHOS_TEST_FOR_EXCEPTION(
      distribution_map.getRawPtr () == NULL, std::invalid_argument,
      "Amesos2::MultiVecAdapter::get1dCopy: distribution_map argument is null.");
    TEUCHOS_TEST_FOR_EXCEPTION(
      mv_.is_null (), std::logic_error,
      "Amesos2::MultiVecAdapter::get1dCopy: mv_ is null.");
    // Check mv_ before getMap(), because the latter calls mv_->getMap().
    TEUCHOS_TEST_FOR_EXCEPTION(
      this->getMap ().is_null (), std::logic_error,
      "Amesos2::MultiVecAdapter::get1dCopy: this->getMap() returns null.");

#ifdef HAVE_AMESOS2_DEBUG
    const size_t requested_vector_length = distribution_map->getNodeNumElements ();
    TEUCHOS_TEST_FOR_EXCEPTION(
      lda < requested_vector_length, std::invalid_argument,
      "Amesos2::MultiVecAdapter::get1dCopy: On process " <<
      distribution_map->getComm ()->getRank () << " of the distribution Map's "
      "communicator, the given stride lda = " << lda << " is not large enough "
      "for the local vector length " << requested_vector_length << ".");
    TEUCHOS_TEST_FOR_EXCEPTION(
      as<size_t> (av.size ()) < as<size_t> ((num_vecs - 1) * lda + requested_vector_length),
      std::invalid_argument, "Amesos2::MultiVector::get1dCopy: MultiVector "
      "storage not large enough given leading dimension and number of vectors." );
#endif // HAVE_AMESOS2_DEBUG

    // (Re)compute the Export object if necessary.  If not, then we
    // don't need to clone distribution_map; we can instead just get
    // the previously cloned target Map from the Export object.
    RCP<const map_type> distMap;
    if (exporter_.is_null () ||
        ! exporter_->getSourceMap ()->isSameAs (* (this->getMap ())) ||
        ! exporter_->getTargetMap ()->isSameAs (* distribution_map)) {

      // Since we're caching the Export object, and since the Export
      // needs to keep the distribution Map, we have to make a copy of
      // the latter in order to ensure that it will stick around past
      // the scope of this function call.  (Ptr is not reference
      // counted.)  Map's clone() method suffices, even though it only
      // makes a shallow copy of some of Map's data, because Map is
      // immutable and those data are reference-counted (e.g.,
      // ArrayRCP or RCP).
      distMap = distribution_map->template clone<Node> (distribution_map->getNode ());

      // (Re)create the Export object.
      exporter_ = rcp (new export_type (this->getMap (), distMap));
    }
    else {
      distMap = exporter_->getTargetMap ();
    }

    multivec_t redist_mv (distMap, num_vecs);

    // Redistribute the input (multi)vector.
    redist_mv.doExport (*mv_, *exporter_, Tpetra::REPLACE);

    // Copy the imported (multi)vector's data into the ArrayView.
    redist_mv.get1dCopy (av, lda);
  }

  template <typename Scalar, typename LocalOrdinal, typename GlobalOrdinal, class Node >
  Teuchos::ArrayRCP<Scalar>
  MultiVecAdapter<
    MultiVector<Scalar,
                LocalOrdinal,
                GlobalOrdinal,
                Node> >::get1dViewNonConst (bool local)
  {
    // FIXME (mfh 22 Jan 2014) When I first found this routine, all of
    // its code was commented out, and it didn't return anything.  The
    // latter is ESPECIALLY dangerous, given that the return value is
    // an ArrayRCP.  Thus, I added the exception throw below.
    TEUCHOS_TEST_FOR_EXCEPTION(
      true, std::logic_error, "Amesos2::MultiVecAdapter::get1dViewNonConst: "
      "Not implemented.");

    // if( local ){
    //   this->localize();
    //   /* Use the global element list returned by
    //    * mv_->getMap()->getNodeElementList() to get a subCopy of mv_ which we
    //    * assign to l_l_mv_, then return get1dViewNonConst() of l_l_mv_
    //    */
    //   if(l_l_mv_.is_null() ){
    //  Teuchos::ArrayView<const GlobalOrdinal> nodeElements_go
    //    = mv_->getMap()->getNodeElementList();
    //  Teuchos::Array<size_t> nodeElements_st(nodeElements_go.size());

    //  // Convert the node element to a list of size_t type objects
    //  typename Teuchos::ArrayView<const GlobalOrdinal>::iterator it_go;
    //  Teuchos::Array<size_t>::iterator it_st = nodeElements_st.begin();
    //  for( it_go = nodeElements_go.begin(); it_go != nodeElements_go.end(); ++it_go ){
    //    *(it_st++) = Teuchos::as<size_t>(*it_go);
    //  }

    //  // To be consistent with the globalize() function, get a view of the local mv
    //  l_l_mv_ = l_mv_->subViewNonConst(nodeElements_st);

    //  return(l_l_mv_->get1dViewNonConst());
    //   } else {
    //  // We need to re-import values to the local, since changes may have been
    //  // made to the global structure that are not reflected in the local
    //  // view.
    //  Teuchos::ArrayView<const GlobalOrdinal> nodeElements_go
    //    = mv_->getMap()->getNodeElementList();
    //  Teuchos::Array<size_t> nodeElements_st(nodeElements_go.size());

    //  // Convert the node element to a list of size_t type objects
    //  typename Teuchos::ArrayView<const GlobalOrdinal>::iterator it_go;
    //  Teuchos::Array<size_t>::iterator it_st = nodeElements_st.begin();
    //  for( it_go = nodeElements_go.begin(); it_go != nodeElements_go.end(); ++it_go ){
    //    *(it_st++) = Teuchos::as<size_t>(*it_go);
    //  }

    //  return l_l_mv_->get1dViewNonConst();
    //   }
    // } else {
    //   if( mv_->isDistributed() ){
    //  this->localize();

    //  return l_mv_->get1dViewNonConst();
    //   } else {                      // not distributed, no need to import
    //  return mv_->get1dViewNonConst();
    //   }
    // }
  }


  template <typename Scalar, typename LocalOrdinal, typename GlobalOrdinal, class Node>
  void
  MultiVecAdapter<
    MultiVector<Scalar,
                LocalOrdinal,
                GlobalOrdinal,
                Node> >::put1dData(const Teuchos::ArrayView<const scalar_t>& new_data,
                                   size_t lda,
                                   Teuchos::Ptr<
                                     const Tpetra::Map<LocalOrdinal,
                                                       GlobalOrdinal,
                                                       Node> > source_map)
  {
    using Teuchos::RCP;
    typedef Tpetra::Map<LocalOrdinal, GlobalOrdinal, Node> map_type;

    TEUCHOS_TEST_FOR_EXCEPTION(
      source_map.getRawPtr () == NULL, std::invalid_argument,
      "Amesos2::MultiVecAdapter::put1dData: source_map argument is null.");
    TEUCHOS_TEST_FOR_EXCEPTION(
      mv_.is_null (), std::logic_error,
      "Amesos2::MultiVecAdapter::put1dData: the internal MultiVector mv_ is null.");
    // getMap() calls mv_->getMap(), so test first whether mv_ is null.
    TEUCHOS_TEST_FOR_EXCEPTION(
      this->getMap ().is_null (), std::logic_error,
      "Amesos2::MultiVecAdapter::put1dData: this->getMap() returns null.");

    const size_t num_vecs = getGlobalNumVectors ();

    // (Re)compute the Import object if necessary.  If not, then we
    // don't need to clone source_map; we can instead just get the
    // previously cloned source Map from the Import object.
    RCP<const map_type> srcMap;
    if (importer_.is_null () ||
        ! importer_->getSourceMap ()->isSameAs (* source_map) ||
        ! importer_->getTargetMap ()->isSameAs (* (this->getMap ()))) {

      // Since we're caching the Import object, and since the Import
      // needs to keep the source Map, we have to make a copy of the
      // latter in order to ensure that it will stick around past the
      // scope of this function call.  (Ptr is not reference counted.)
      // Map's clone() method suffices, even though it only makes a
      // shallow copy of some of Map's data, because Map is immutable
      // and those data are reference-counted (e.g., ArrayRCP or RCP).
      srcMap = source_map->template clone<Node> (source_map->getNode ());
      importer_ = rcp (new import_type (srcMap, this->getMap ()));
    }
    else {
      srcMap = importer_->getSourceMap ();
    }

    const multivec_t source_mv (srcMap, new_data, lda, num_vecs);

    // Redistribute the output (multi)vector.
    mv_->doImport (source_mv, *importer_, Tpetra::REPLACE);
  }


  template <typename Scalar, typename LocalOrdinal, typename GlobalOrdinal, class Node >
  std::string
  MultiVecAdapter<
    MultiVector<Scalar,
                LocalOrdinal,
                GlobalOrdinal,
                Node> >::description() const
  {
    std::ostringstream oss;
    oss << "Amesos2 adapter wrapping: ";
    oss << mv_->description();
    return oss.str();
  }


  template <typename Scalar, typename LocalOrdinal, typename GlobalOrdinal, class Node >
  void
  MultiVecAdapter<
    MultiVector<Scalar,
                LocalOrdinal,
                GlobalOrdinal,
                Node> >::describe (Teuchos::FancyOStream& os,
                                   const Teuchos::EVerbosityLevel verbLevel) const
  {
    mv_->describe (os, verbLevel);
  }


  template <typename Scalar, typename LocalOrdinal, typename GlobalOrdinal, class Node >
  const char* MultiVecAdapter<
    MultiVector<Scalar,
                LocalOrdinal,
                GlobalOrdinal,
                Node> >::name = "Amesos2 adapter for Tpetra::MultiVector";

} // end namespace Amesos2

#endif // AMESOS2_TPETRA_MULTIVEC_ADAPTER_DEF_HPP