This file is indexed.

/usr/include/sofa/gpu/cuda/CudaFixedConstraint.inl is in libsofa1-dev 1.0~beta4-10ubuntu2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
/******************************************************************************
*       SOFA, Simulation Open-Framework Architecture, version 1.0 beta 4      *
*                (c) 2006-2009 MGH, INRIA, USTL, UJF, CNRS                    *
*                                                                             *
* This library is free software; you can redistribute it and/or modify it     *
* under the terms of the GNU Lesser General Public License as published by    *
* the Free Software Foundation; either version 2.1 of the License, or (at     *
* your option) any later version.                                             *
*                                                                             *
* This library is distributed in the hope that it will be useful, but WITHOUT *
* ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or       *
* FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License *
* for more details.                                                           *
*                                                                             *
* You should have received a copy of the GNU Lesser General Public License    *
* along with this library; if not, write to the Free Software Foundation,     *
* Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301 USA.          *
*******************************************************************************
*                               SOFA :: Modules                               *
*                                                                             *
* Authors: The SOFA Team and external contributors (see Authors.txt)          *
*                                                                             *
* Contact information: contact@sofa-framework.org                             *
******************************************************************************/
#ifndef SOFA_GPU_CUDA_CUDAFIXEDCONSTRAINT_INL
#define SOFA_GPU_CUDA_CUDAFIXEDCONSTRAINT_INL

#include "CudaFixedConstraint.h"
#include <sofa/component/constraint/FixedConstraint.inl>

namespace sofa
{

namespace gpu
{

namespace cuda
{

extern "C"
{
void FixedConstraintCuda3f_projectResponseContiguous(unsigned int size, void* dx);
void FixedConstraintCuda3f_projectResponseIndexed(unsigned int size, const void* indices, void* dx);
void FixedConstraintCuda3f1_projectResponseContiguous(unsigned int size, void* dx);
void FixedConstraintCuda3f1_projectResponseIndexed(unsigned int size, const void* indices, void* dx);

#ifdef SOFA_GPU_CUDA_DOUBLE

void FixedConstraintCuda3d_projectResponseContiguous(unsigned int size, void* dx);
void FixedConstraintCuda3d_projectResponseIndexed(unsigned int size, const void* indices, void* dx);
void FixedConstraintCuda3d1_projectResponseContiguous(unsigned int size, void* dx);
void FixedConstraintCuda3d1_projectResponseIndexed(unsigned int size, const void* indices, void* dx);

#endif // SOFA_GPU_CUDA_DOUBLE
}

} // namespace cuda

} // namespace gpu

namespace component
{

namespace constraint
{

using namespace gpu::cuda;

template<class TCoord, class TDeriv, class TReal>
void FixedConstraintInternalData< gpu::cuda::CudaVectorTypes<TCoord,TDeriv,TReal> >::init(Main* m)
{
    Data& data = m->data;
    data.minIndex = -1;
    data.maxIndex = -1;
    data.cudaIndices.clear();
    m->core::componentmodel::behavior::Constraint<DataTypes>::init();
	const SetIndex& indices = m->f_indices.getValue();
	if (!indices.empty())
	{
		// put indices in a set to sort them and remove duplicates
		std::set<int> sortedIndices;
		for (typename SetIndex::const_iterator it = indices.begin(); it!=indices.end(); it++)
			sortedIndices.insert(*it);
		// check if the indices are contiguous
		if (*sortedIndices.begin() + (int)sortedIndices.size()-1 == *sortedIndices.rbegin())
		{
			data.minIndex = *sortedIndices.begin();
			data.maxIndex = *sortedIndices.rbegin();
			//std::cout << "CudaFixedConstraint: "<<sortedIndices.size()<<" contiguous fixed indices, "<<data.minIndex<<" - "<<data.maxIndex<<sendl;
		}
		else
		{
		    //std::cout << "CudaFixedConstraint: "<<sortedIndices.size()<<" non-contiguous fixed indices"<<sendl;
			data.cudaIndices.reserve(sortedIndices.size());
			for (std::set<int>::const_iterator it = sortedIndices.begin(); it!=sortedIndices.end(); it++)
				data.cudaIndices.push_back(*it);
		}
	}
}

template<class TCoord, class TDeriv, class TReal>
void FixedConstraintInternalData< gpu::cuda::CudaVectorTypes<TCoord,TDeriv,TReal> >::addConstraint(Main* m, unsigned int index)
{
    Data& data = m->data;
    //std::cout << "CudaFixedConstraint::addConstraint("<<index<<")\n";
    m->f_indices.beginEdit()->push_back(index);
    m->f_indices.endEdit();
    if (data.cudaIndices.empty())
    {
        if (data.minIndex == -1)
        {
            //std::cout << "CudaFixedConstraint: single index "<<index<<"\n";
            data.minIndex = index;
            data.maxIndex = index;
        }
	else if ((int)index >= data.minIndex && (int)index <= data.maxIndex)
	{
	    // point already fixed
	}
        else if (data.minIndex == (int)index+1)
        {
            data.minIndex = index;
            //std::cout << "CudaFixedConstraint: new min index "<<index<<"\n";
        }
        else if (data.maxIndex == (int)index-1)
        {
            data.maxIndex = index;
            //std::cout << "CudaFixedConstraint: new max index "<<index<<"\n";
        }
        else
        {
            data.cudaIndices.reserve(data.maxIndex-data.minIndex+2);
            for (int i=data.minIndex;i<data.maxIndex;i++)
                data.cudaIndices.push_back(i);
            data.cudaIndices.push_back(index);
            data.minIndex = -1;
            data.maxIndex = -1;
	    std::cout << "CudaFixedConstraint: new indices array size "<<data.cudaIndices.size()<<"\n";
        }
    }
    else
    {
        data.cudaIndices.push_back(index);
        //std::cout << "CudaFixedConstraint: indices array size "<<data.cudaIndices.size()<<"\n";
    }
}

template<class TCoord, class TDeriv, class TReal>
void FixedConstraintInternalData< gpu::cuda::CudaVectorTypes<TCoord,TDeriv,TReal> >::removeConstraint(Main* m, unsigned int index)
{
    Data& data = m->data;
    removeValue(*m->f_indices.beginEdit(),index);
    m->f_indices.endEdit();
    if (data.cudaIndices.empty())
    {
        if (data.minIndex <= (int)index && (int)index <= data.maxIndex)
        {
            if (data.minIndex == (int)index)
            {
                if (data.maxIndex == (int)index)
                {
                    // empty set
                    data.minIndex = -1;
                    data.maxIndex = -1;
                }
                else
                    ++data.minIndex;
            }
            else if (data.maxIndex == (int)index)
                --data.maxIndex;
            else
            {
                data.cudaIndices.reserve(data.maxIndex-data.minIndex);
                for (int i=data.minIndex;i<data.maxIndex;i++)
                    if (i != (int)index)
                        data.cudaIndices.push_back(i);
                data.minIndex = -1;
                data.maxIndex = -1;
            }
        }
    }
    else
    {
        bool found = false;
        for (unsigned int i=0; i<data.cudaIndices.size(); i++)
        {
            if (found)
                data.cudaIndices[i-1] = data.cudaIndices[i];
            else if (data.cudaIndices[i] == (int)index)
                found = true;
        }
        if (found)
            data.cudaIndices.resize(data.cudaIndices.size()-1);
    }
}


template <>
void FixedConstraintInternalData<gpu::cuda::CudaVec3fTypes>::projectResponse(Main* m, VecDeriv& dx)
{
    Data& data = m->data;
    if (m->f_fixAll.getValue())
	FixedConstraintCuda3f_projectResponseContiguous(dx.size(), ((float*)dx.deviceWrite()));
    else if (data.minIndex >= 0)
	FixedConstraintCuda3f_projectResponseContiguous(data.maxIndex-data.minIndex+1, ((float*)dx.deviceWrite())+3*data.minIndex);
    else
	FixedConstraintCuda3f_projectResponseIndexed(data.cudaIndices.size(), data.cudaIndices.deviceRead(), dx.deviceWrite());
}

template <>
void FixedConstraintInternalData<gpu::cuda::CudaVec3f1Types>::projectResponse(Main* m, VecDeriv& dx)
{
    Data& data = m->data;
    if (m->f_fixAll.getValue())
	FixedConstraintCuda3f1_projectResponseContiguous(dx.size(), ((float*)dx.deviceWrite()));
    else if (data.minIndex >= 0)
	FixedConstraintCuda3f1_projectResponseContiguous(data.maxIndex-data.minIndex+1, ((float*)dx.deviceWrite())+4*data.minIndex);
    else
	FixedConstraintCuda3f1_projectResponseIndexed(data.cudaIndices.size(), data.cudaIndices.deviceRead(), dx.deviceWrite());
}

#ifdef SOFA_GPU_CUDA_DOUBLE

template <>
void FixedConstraintInternalData<gpu::cuda::CudaVec3dTypes>::projectResponse(Main* m, VecDeriv& dx)
{
    Data& data = m->data;
    if (m->f_fixAll.getValue())
	FixedConstraintCuda3d_projectResponseContiguous(dx.size(), ((double*)dx.deviceWrite()));
    else if (data.minIndex >= 0)
	FixedConstraintCuda3d_projectResponseContiguous(data.maxIndex-data.minIndex+1, ((double*)dx.deviceWrite())+3*data.minIndex);
    else
	FixedConstraintCuda3d_projectResponseIndexed(data.cudaIndices.size(), data.cudaIndices.deviceRead(), dx.deviceWrite());
}

template <>
void FixedConstraintInternalData<gpu::cuda::CudaVec3d1Types>::projectResponse(Main* m, VecDeriv& dx)
{
    Data& data = m->data;
    if (m->f_fixAll.getValue())
	FixedConstraintCuda3d1_projectResponseContiguous(dx.size(), ((double*)dx.deviceWrite()));
    else if (data.minIndex >= 0)
	FixedConstraintCuda3d1_projectResponseContiguous(data.maxIndex-data.minIndex+1, ((double*)dx.deviceWrite())+4*data.minIndex);
    else
	FixedConstraintCuda3d1_projectResponseIndexed(data.cudaIndices.size(), data.cudaIndices.deviceRead(), dx.deviceWrite());
}

#endif // SOFA_GPU_CUDA_DOUBLE

// I know using macros is bad design but this is the only way not to repeat the code for all CUDA types
#define CudaFixedConstraint_ImplMethods(T) \
    template<> void FixedConstraint< T >::init() \
    { data.init(this); } \
    template<> void FixedConstraint< T >::addConstraint(unsigned int index) \
    { data.addConstraint(this, index); } \
    template<> void FixedConstraint< T >::removeConstraint(unsigned int index) \
    { data.removeConstraint(this, index); } \
    template<> void FixedConstraint< T >::projectResponse(VecDeriv& dx) \
    { data.projectResponse(this, dx); }

CudaFixedConstraint_ImplMethods(gpu::cuda::CudaVec3fTypes);
CudaFixedConstraint_ImplMethods(gpu::cuda::CudaVec3f1Types);

#ifdef SOFA_GPU_CUDA_DOUBLE

CudaFixedConstraint_ImplMethods(gpu::cuda::CudaVec3dTypes);
CudaFixedConstraint_ImplMethods(gpu::cuda::CudaVec3d1Types);

#endif // SOFA_GPU_CUDA_DOUBLE

#undef CudaFixedConstraint_ImplMethods

} // namespace constraint

} // namespace component

} // namespace sofa

#endif