This file is indexed.

/usr/include/sofa/filemanager/sofapml/LMLConstraint.inl is in libsofa1-dev 1.0~beta4-10ubuntu2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
/******************************************************************************
*       SOFA, Simulation Open-Framework Architecture, version 1.0 beta 4      *
*                (c) 2006-2009 MGH, INRIA, USTL, UJF, CNRS                    *
*                                                                             *
* This library is free software; you can redistribute it and/or modify it     *
* under the terms of the GNU Lesser General Public License as published by    *
* the Free Software Foundation; either version 2.1 of the License, or (at     *
* your option) any later version.                                             *
*                                                                             *
* This library is distributed in the hope that it will be useful, but WITHOUT *
* ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or       *
* FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License *
* for more details.                                                           *
*                                                                             *
* You should have received a copy of the GNU Lesser General Public License    *
* along with this library; if not, write to the Free Software Foundation,     *
* Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301 USA.          *
*******************************************************************************
*                               SOFA :: Modules                               *
*                                                                             *
* Authors: The SOFA Team and external contributors (see Authors.txt)          *
*                                                                             *
* Contact information: contact@sofa-framework.org                             *
******************************************************************************/
#ifndef LMLCONSTRAINT_INL
#define LMLCONSTRAINT_INL

#include "sofa/core/componentmodel/behavior/Constraint.inl"
#include "LMLConstraint.h"
#include "sofa/helper/gl/template.h"

namespace sofa
{

namespace filemanager
{

namespace pml
{


template<class DataTypes>
LMLConstraint<DataTypes>::LMLConstraint(Loads* loadsList, const map<unsigned int, unsigned int> &atomIndexToDOFIndex, MechanicalState<DataTypes> *mm)
: Constraint<DataTypes>(mm), atomToDOFIndexes(atomIndexToDOFIndex)
{
	mmodel = mm;
	loads = new Loads();
	Load * load;
	SReal dirX, dirY, dirZ;
	this->setName("loads");

	//for each load, we search which ones are translations applied on the body nodes
	for (unsigned int i=0 ; i<loadsList->numberOfLoads() ; i++) {
		load = loadsList->getLoad(i);
		if (load->getType() == "Translation") {
			if (load->getDirection().isToward()) {
				std::map<unsigned int, unsigned int>::const_iterator titi = atomIndexToDOFIndex.find(load->getDirection().getToward());
				if (titi != atomIndexToDOFIndex.end()){
					unsigned int dofInd = titi->second;
					dirX = (*mm->getX())[dofInd].x();
					dirY = (*mm->getX())[dofInd].y();
					dirZ = (*mm->getX())[dofInd].z();
				}
			}
			else
				load->getDirection(dirX, dirY, dirZ);
			unsigned int cpt=0;
			for (unsigned int j=0 ; j<load->numberOfTargets(); j++) {
				std::map<unsigned int, unsigned int>::const_iterator result = atomIndexToDOFIndex.find(load->getTarget(j));
				if (result != atomIndexToDOFIndex.end()) {
					cpt++;
					if (load->getDirection().isToward())
						addConstraint(result->second, Deriv(dirX-(*mm->getX())[result->second].x(),dirY-(*mm->getX())[result->second].y(),dirZ-(*mm->getX())[result->second].z()) );
					else
						addConstraint(result->second, Deriv(dirX,dirY,dirZ) );
                    // fix targets on the X axe
					if (load->getDirection().isXNull() && load->getValue(0) != 0)
						fixDOF(result->second, 0);
					if (load->getDirection().isYNull() && load->getValue(0) != 0) // fix targets on the Y axe
						fixDOF(result->second, 1);
					if (load->getDirection().isZNull() && load->getValue(0) != 0) // fix targets on the Z axe
						fixDOF(result->second, 2);
				}
			}
			if (cpt > 0)
				loads->addLoad(load);
		}
	}
}
	

template<class DataTypes>
LMLConstraint<DataTypes>*  LMLConstraint<DataTypes>::addConstraint(unsigned int index, Deriv trans)
{
	this->targets.push_back(index);
	trans.normalize();
	this->translations.push_back(trans);
	this->directionsNULLs.push_back(Deriv(1,1,1));
	this->initPos.push_back(Deriv(0,0,0));
	return this;
}

template<class DataTypes>
LMLConstraint<DataTypes>*  LMLConstraint<DataTypes>::removeConstraint(int index)
{
	std::vector<unsigned int>::iterator it1=targets.begin();
	VecDerivIterator it2=translations.begin();
	VecDerivIterator it3=directionsNULLs.begin();
	while(it1 != targets.end() && *it1!=(unsigned)index) {
		it1++;
		it2++;
		it3++;
	}

	targets.erase(it1);
	translations.erase(it2);
	directionsNULLs.erase(it3);

	return this;
}


template<class DataTypes>
void LMLConstraint<DataTypes>::fixDOF(int index, int axe) 
{
	//set the value to 1 on the corrects vector component
	std::vector<unsigned int>::iterator it1=targets.begin();
	VecDerivIterator it2 = directionsNULLs.begin();
	while(it1 != targets.end() && *it1!=(unsigned)index) {
		it1++;
		it2++;
	}

	(*it2)[axe] = 0;
}


template<class DataTypes>
void LMLConstraint<DataTypes>::projectResponse(VecDeriv& dx)
{
	//VecCoord& x = *this->mmodel->getX();
	//dx.resize(x.size());
	SReal time = this->getContext()->getTime();
	SReal prevTime = time - this->getContext()->getDt();

	std::vector<unsigned int>::iterator it1=targets.begin();
	VecDerivIterator it2=translations.begin();
	VecDerivIterator it3=directionsNULLs.begin();
	Load * load;
	SReal valTime, prevValTime;

	for (unsigned int i=0 ; i<loads->numberOfLoads() ; i++) {
		load = loads->getLoad(i);
		valTime = load->getValue(time);
		prevValTime = load->getValue(prevTime);
		for(unsigned int j=0 ; j<load->numberOfTargets();j++) {
			if ( atomToDOFIndexes.find(load->getTarget(j)) != atomToDOFIndexes.end() ) 
			{
				//Deriv dirVec(0,0,0);
				if (load->getDirection().isXNull() && valTime != 0) 
					(*it3)[0]=0;	// fix targets on the X axe
				if (load->getDirection().isYNull() && valTime != 0) 
					(*it3)[1]=0;	// fix targets on the Y axe
				if (load->getDirection().isZNull() && valTime != 0) 
					(*it3)[2]=0;	// fix targets on the Z axe

				if (valTime == 0)
					(*it3) = Deriv(1,1,1);
				else{
					if (load->getDirection().isToward()) {
						std::map<unsigned int, unsigned int>::const_iterator titi = atomToDOFIndexes.find(load->getDirection().getToward());
						if (titi != atomToDOFIndexes.end()){
							(*it2) = (*mmodel->getX())[titi->second] - (*mmodel->getX())[*it1];
							it2->normalize();
						}
					}
					//cancel the dx value on the axes fixed (where directionNULLs value is equal to 1)
					//Or apply the translation vector (where directionNULLs value is equal to 0)
					dx[*it1][0] = ((*it2)[0]*valTime)-((*it2)[0]*prevValTime)*(*it3)[0];
					dx[*it1][1] = ((*it2)[1]*valTime)-((*it2)[1]*prevValTime)*(*it3)[1];
					dx[*it1][2] = ((*it2)[2]*valTime)-((*it2)[2]*prevValTime)*(*it3)[2];
				}

				it1++;
				it2++;
				it3++;
			}
		}
	}
}

template<class DataTypes>
void LMLConstraint<DataTypes>::projectPosition(VecCoord& x)
{
	SReal time = getContext()->getTime();

	std::vector<unsigned int>::iterator it1=targets.begin();
	VecDerivIterator it2=translations.begin();
	VecDerivIterator it3=initPos.begin();
	Load * load;

	for (unsigned int i=0 ; i<loads->numberOfLoads() ; i++) 
	{
		load = loads->getLoad(i);
		for(unsigned int j=0 ; j<load->numberOfTargets();j++) 
		{
			if ( atomToDOFIndexes.find(load->getTarget(j)) != atomToDOFIndexes.end() ) {
				if ( (*it3)[0]==0.0 && (*it3)[1]==0.0 && (*it3)[2]==0.0)
					*it3 = x[*it1];
				if(  load->getDirection().isXNull() && load->getDirection().isYNull() && load->getDirection().isZNull() )
					*it3 = x[*it1];

				if (load->getValue(time) != 0.0){
					if (load->getDirection().isToward()) {
						std::map<unsigned int, unsigned int>::const_iterator titi = atomToDOFIndexes.find(load->getDirection().getToward());
						if (titi != atomToDOFIndexes.end()){
							(*it2) = (*mmodel->getX())[titi->second] - (*mmodel->getX())[*it1];
							it2->normalize();
						}
					}
					x[*it1] = (*it3) + (*it2)*load->getValue(time);
				}
			
				it1++;
				it2++;
				it3++;
			}
		}
	}
}



// -- VisualModel interface
template<class DataTypes>
void LMLConstraint<DataTypes>::draw()
{
	
	if (!getContext()->getShowBehaviorModels()) return;

	VecCoord& x = *mmodel->getX();
	glDisable (GL_LIGHTING);
	glColor4f (1,0.5,0.5,1);

	glPointSize(10);

	//for Fixed points, display a big red point
	glBegin (GL_POINTS);
	VecDerivIterator it2 = directionsNULLs.begin();
	for (std::vector<unsigned int>::const_iterator it = this->targets.begin(); it != this->targets.end(); ++it)
	{
		if ((*it2)[0]==0 && (*it2)[1]==0 && (*it2)[2]==0 )
			helper::gl::glVertexT(x[*it]);
		it2++;
	}
	glEnd();

	//for translated points, display a little red segment with translation direction
	glPointSize(1);
	glBegin( GL_LINES );
	VecDerivIterator it3 = translations.begin();
	it2 = directionsNULLs.begin();
	for (std::vector<unsigned int>::const_iterator it = this->targets.begin(); it != this->targets.end(); ++it)
	{
		if ((*it2)[0]==1 || (*it2)[1]==1 || (*it2)[2]==1 ) {
			helper::gl::glVertexT(x[*it]);
			helper::gl::glVertexT(x[*it]+*it3);
		}
		it3++;
		it2++;
	}
	glEnd();


}

}
}
}

#endif //LMLCONSTRAINT_INL