/usr/include/pbihdf/HDFScanDataWriter.hpp is in libpbihdf-dev 0~20151014+gitbe5d1bf-2.
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//
// All rights reserved.
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// Redistribution and use in source and binary forms, with or without
// modification, are permitted (subject to the limitations in the
// disclaimer below) provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// * Redistributions in binary form must reproduce the above
// copyright notice, this list of conditions and the following
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// with the distribution.
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// from this software without specific prior written permission.
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// GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC
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// LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
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// Author: Yuan Li
#ifndef DATA_HDF_HDF_SCAN_DATA_WRITER_H_
#define DATA_HDF_HDF_SCAN_DATA_WRITER_H_
#include <string>
#include <iostream>
#include "HDFFile.hpp"
#include "HDFGroup.hpp"
#include "HDFAtom.hpp"
#include "Enumerations.h"
#include "reads/ScanData.hpp"
class HDFScanDataWriter {
private:
HDFGroup * rootGroupPtr;
HDFGroup scanDataGroup;
HDFGroup acqParamsGroup;
HDFGroup dyeSetGroup;
HDFGroup runInfoGroup;
HDFAtom<std::string> whenStartedAtom;
HDFAtom<float> frameRateAtom;
HDFAtom<unsigned int> numFramesAtom;
HDFAtom<std::string> baseMapAtom;
HDFAtom<unsigned int> numAnalogAtom;
HDFAtom<std::string> movieNameAtom;
HDFAtom<std::string> runCodeAtom;
HDFAtom<std::string> bindingKitAtom;
HDFAtom<std::string> sequencingKitAtom;
HDFAtom<unsigned int> platformIdAtom;
HDFAtom<std::string> platformNameAtom;
void CreateAcqParamsGroup();
void CreateDyeSetGroup();
void CreateRunInfoGroup();
public:
HDFScanDataWriter(HDFFile & _outFile);
HDFScanDataWriter(HDFGroup & _rootGroup);
~HDFScanDataWriter();
int Initialize(HDFGroup & _rootGroup);
void Write(const ScanData & scanData);
void WriteFrameRate(const float frameRate);
void WriteNumFrames(const unsigned int numFrames);
void WriteWhenStarted(const std::string whenStarted);
void Close();
private:
void WriteBaseMap(const std::string baseMapStr);
void WriteNumAnalog(const unsigned int numAnalog);
void WritePlatformId(const PlatformId id);
void WriteMovieName(const std::string movieName);
void WriteRunCode(const std::string runCode);
void WriteBindingKit(const std::string & bindingKit);
void WriteSequencingKit(const std::string & sequencingKit);
};
#endif
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