This file is indexed.

/usr/include/openturns/NegativeBinomial.hxx is in libopenturns-dev 1.5-7build2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
//                                               -*- C++ -*-
/**
 *  @file  NegativeBinomial.hxx
 *  @brief The NegativeBinomial distribution
 *
 *  Copyright 2005-2015 Airbus-EDF-IMACS-Phimeca
 *
 *  This library is free software: you can redistribute it and/or modify
 *  it under the terms of the GNU Lesser General Public License as published by
 *  the Free Software Foundation, either version 3 of the License, or
 *  (at your option) any later version.
 *
 *  This library is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU Lesser General Public License for more details.
 *
 *  You should have received a copy of the GNU Lesser General Public
 *  along with this library.  If not, see <http://www.gnu.org/licenses/>.
 *
 *  @author dutka
 *  @date   2010-07-12 15:45:44 +0200 (lun. 12 juil. 2010)
 */
#ifndef OPENTURNS_NEGATIVEBINOMIAL_HXX
#define OPENTURNS_NEGATIVEBINOMIAL_HXX

#include "OTprivate.hxx"
#include "DiscreteDistribution.hxx"

BEGIN_NAMESPACE_OPENTURNS

/**
 * @class NegativeBinomial
 *
 * The NegativeBinomial distribution.
 */
class OT_API NegativeBinomial
  : public DiscreteDistribution
{
  CLASSNAME;
public:

  /** Default constructor */
  NegativeBinomial();

  /** Parameters constructor */
  NegativeBinomial(const NumericalScalar r,
                   const NumericalScalar p);

  /** Comparison operator */
  Bool operator ==(const NegativeBinomial & other) const;

  /** String converter */
  String __repr__() const;
  String __str__(const String & offset = "") const;

  /* Interface inherited from Distribution */

  /** Virtual constructor */
  virtual NegativeBinomial * clone() const;

  /** Get one realization of the distribution */
  NumericalPoint getRealization() const;

  /** Get the PDF of the distribution */
  using DiscreteDistribution::computePDF;
  NumericalScalar computePDF(const NumericalPoint & point) const;

  /** Get the CDF of the distribution */
  using DiscreteDistribution::computeCDF;
  NumericalScalar computeCDF(const NumericalPoint & point) const;
  using DiscreteDistribution::computeComplementaryCDF;
  NumericalScalar computeComplementaryCDF(const NumericalPoint & point) const;

  /** Get the PDFGradient of the distribution */
  using DiscreteDistribution::computePDFGradient;
  NumericalPoint computePDFGradient(const NumericalPoint & point) const;

  /** Get the CDFGradient of the distribution */
  using DiscreteDistribution::computeCDFGradient;
  NumericalPoint computeCDFGradient(const NumericalPoint & point) const;

  /** Compute the characteristic function, i.e. phi(u) = E(exp(I*u*X)) */
  NumericalComplex computeCharacteristicFunction(const NumericalScalar x) const;
  NumericalComplex computeLogCharacteristicFunction(const NumericalScalar x) const;

  /** Compute the generating function, i.e. psi(z) = E(z^X) */
  NumericalComplex computeGeneratingFunction(const NumericalComplex & z) const;
  NumericalComplex computeLogGeneratingFunction(const NumericalComplex & z) const;

  /** Get the support of a discrete distribution that intersect a given interval */
  using DistributionImplementation::getSupport;
  NumericalSample getSupport(const Interval & interval) const;

  /** Get the standard deviation of the distribution */
  NumericalPoint getStandardDeviation() const;

  /** Get the skewness of the distribution */
  NumericalPoint getSkewness() const;

  /** Get the kurtosis of the distribution */
  NumericalPoint getKurtosis() const;

  /** Parameters value and description accessor */
  NumericalPointWithDescriptionCollection getParametersCollection() const;
  using DiscreteDistribution::setParametersCollection;
  void setParametersCollection(const NumericalPointCollection & parametersCollection);

  /* Interface specific to NegativeBinomial */

  /** P accessor */
  void setP(const NumericalScalar p);
  NumericalScalar getP() const;

  /** R accessor */
  void setR(const NumericalScalar r);
  NumericalScalar getR() const;

  /** Method save() stores the object through the StorageManager */
  void save(Advocate & adv) const;

  /** Method load() reloads the object from the StorageManager */
  void load(Advocate & adv);

protected:

private:

  /** Compute the mean of the distribution */
  void computeMean() const;

  /** Compute the covariance of the distribution */
  void computeCovariance() const;

  /** Get the quantile of the distribution */
  NumericalScalar computeScalarQuantile(const NumericalScalar prob,
                                        const Bool tail = false) const;

  /** Compute the numerical range of the distribution given the parameters values */
  void computeRange();

  /** The maximum value of the NegativeBinomial distribution */
  NumericalScalar r_;

  /** The probability parameter of the NegativeBinomial distribution */
  NumericalScalar p_;

}; /* class NegativeBinomial */


END_NAMESPACE_OPENTURNS

#endif /* OPENTURNS_NEGATIVEBINOMIAL_HXX */