/usr/include/ncbi/urktree.h is in libncbi6-dev 6.1.20120620-10.
This file is owned by root:root, with mode 0o644.
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* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
* File Name: urktree.h
*
* Author(s): John Kuzio
*
* Version Creation Date: 98-01-01
*
* $Revision: 6.3 $
*
* File Description: trees header
*
* Modifications:
* --------------------------------------------------------------------------
* Date Name Description of modification
* --------------------------------------------------------------------------
* $Log: urktree.h,v $
* Revision 6.3 1998/09/16 17:46:47 kuzio
* cvs logging
*
*
* ==========================================================================
*/
#ifndef _URKTREE__
#define _URKTREE__
#include <ncbi.h>
#ifdef __cplusplus
extern "C" {
#endif
#define TREE_NULL 0
#define TREE_ROOTED 1
#define TREE_UNROOTED 2
typedef struct GeneTreeNode
{
CharPtr name;
FloatHi score;
Boolean flagPivot;
Int4 level, nodenumber;
Int4 xcoord, ycoord;
struct GeneTreeNode PNTR ptrChildLeft, PNTR ptrChildRight, PNTR ptrUp;
struct GeneTreeNode PNTR ptrLevelLeft, PNTR ptrLevelRight;
} TreeNode, PNTR TreeNodePtr;
extern TreeNodePtr TreeCenterNode (TreeNodePtr ptrNode);
extern TreeNodePtr ExploreUnrootedTreeNumber (TreeNodePtr ptrNode,
Int4 nodenumber);
extern TreeNodePtr ExploreUnrootedTree (TreeNodePtr ptrNode,
TreeNodePtr ptrSkip,
Int4 nodenumber);
extern TreeNodePtr ExploreTreeNumber (TreeNodePtr ptrNode,
Int4 nodenumber);
extern TreeNodePtr ExploreTreeLevel (TreeNodePtr ptrNode, TreeNodePtr ptrSkip,
Int4 level, Boolean PNTR flagTakeNext);
extern TreeNodePtr ExploreTree (TreeNodePtr ptrNode, TreeNodePtr ptrSkip,
Boolean PNTR flagTakeNext);
extern Int4 GetDeepestLevelBranch (TreeNodePtr ptrNode, Int4 level);
extern Int4 GetDeepestLevel (TreeNodePtr ptrNode);
extern TreeNodePtr GetWidestLevelLeftNode (TreeNodePtr ptrNode,
Int4 startlevel);
extern TreeNodePtr GetLevelLeftNode (TreeNodePtr ptrNode, Int4 level);
extern void SetLevelNode (TreeNodePtr ptrNode, Int4 level);
extern void SetAllLevelNodes (TreeNodePtr ptrNode);
extern Int4 SetNumberNode (TreeNodePtr ptrNode, Int4 nodenumber);
extern Int4 SetAllNumberNodes (TreeNodePtr ptrNode);
extern void ZeroNodes (TreeNodePtr ptrNode);
extern Int4 CountNodes (TreeNodePtr ptrNode, Int4 nodenumber);
extern Int4 CountNodesOnLevel (TreeNodePtr ptrNode, Int4 level);
extern TreeNodePtr HeadNode (TreeNodePtr ptrNode);
extern TreeNodePtr LastNode (TreeNodePtr ptrNode);
extern TreeNodePtr FindPivotNode (TreeNodePtr ptrNode,
TreeNodePtr ptrSkip);
extern TreeNodePtr SetPivotNode (TreeNodePtr ptrNode, Int4 level);
extern TreeNodePtr SetAllPivotNodes (TreeNodePtr ptrNode);
extern void UnSetPivotNodes (TreeNodePtr ptrNode);
extern void SetLeftRightRootedTreeNeighbors (TreeNodePtr ptrNode, Int4 level);
extern void SetAllLeftRightRootedTreeNeighbors (TreeNodePtr ptrNode);
extern Int4 GetMaximumTreeXcoord (TreeNodePtr ptrNode);
extern Int4 GetMinimumTreeXcoord (TreeNodePtr ptrNode);
extern Int4 GetMaximumTreeYcoord (TreeNodePtr ptrNode);
extern Int4 GetMinimumTreeYcoord (TreeNodePtr ptrNode);
extern void SetAllCoordinates (TreeNodePtr ptrNode, Int4 Xcoord, Int4 Ycoord,
Int4 Xdelta, Int4 Ydelta);
extern void SetTheoreticalCoordinates (TreeNodePtr ptrNode,
Int4 xcoord, Int4 ycoord,
Int4 xdelta, Int4 ydelta,
Int4 xroot, Int4 xparent,
Int4 xoffset, Int4 xoffmax);
extern void SetAllTheoreticalCoordinates (TreeNodePtr ptrNode,
Int4 xcoord, Int4 ycoord);
extern void AdjustTheoreticalCoordinates (TreeNodePtr ptrNode,
Int4 Xcoord, Int4 Xdelta,
Int4 level);
extern void AdjustAllTheoreticalCoordinates (TreeNodePtr ptrNode, Int4 Xcoord);
extern void ChangeTreeScale (TreeNodePtr ptrNode, Int4 Xcoord, Int4 Ycoord,
FloatHi sx, FloatHi sy);
extern void ShiftTree (TreeNodePtr ptrNode, Int4 sx, Int4 sy);
extern Int4 TestTree (TreeNodePtr ptrNode);
extern TreeNodePtr RootTree (TreeNodePtr ptrNode,
Int4 left, Int4 right);
extern TreeNodePtr UnrootTree (TreeNodePtr ptrNode);
extern TreeNodePtr TreeNodeNew (void);
extern TreeNodePtr TreeNodeFree (TreeNodePtr ptrNode);
extern TreeNodePtr TreeNodeFreeBranch (TreeNodePtr ptrNode);
extern TreeNodePtr TreeNodeFreeTree (TreeNodePtr ptrNode);
#ifdef __cplusplus
}
#endif
#endif
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