/usr/include/ncbi/urkpcc.h is in libncbi6-dev 6.1.20120620-10.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
* File Name: urkpcc.h
*
* Author(s): John Kuzio
*
* Version Creation Date: 98-01-01
*
* $Revision: 6.5 $
*
* File Description: coiled-coil header
*
* Modifications:
* --------------------------------------------------------------------------
* Date Name Description of modification
* --------------------------------------------------------------------------
* $Log: urkpcc.h,v $
* Revision 6.5 1998/11/16 14:29:50 kuzio
* flagBoundaryCondition
*
* Revision 6.4 1998/09/16 17:46:46 kuzio
* cvs logging
*
*
* ==========================================================================
*/
#ifndef _URKPCC__
#define _URKPCC__
#include <ncbi.h>
#include <seqport.h>
#ifdef __cplusplus
extern "C" {
#endif
#define PI 3.141592654
typedef struct predictCCdata
{
FloatHi meang, stdg, meanc, stdc;
Int4 window, linker;
CharPtr pccdatafile;
CharPtr res;
FloatHiPtr PNTR scr;
} PccDat, PNTR PccDatPtr;
/*
caller responsibiliity
pccp = PccDatNew ();
ReadPccData (pccp);
probability_scores = PredictCC...
MemFree (probability_scores);
PccDatFree (pccp);
*/
extern Int4 ReadPccData (PccDatPtr pccp);
extern PccDatPtr PccDatNew (void);
extern PccDatPtr PccDatFree (PccDatPtr pccp);
extern FloatHiPtr PredictCC (CharPtr seq, Int4 start, Int4 end,
PccDatPtr pccp);
extern FloatHiPtr PredictCCSeqPort (SeqPortPtr spp,
Int4 start, Int4 end,
PccDatPtr pccp);
extern FloatHiPtr PredictCCBioseq (BioseqPtr bsp,
Int4 start, Int4 end,
PccDatPtr pccp);
extern FloatHiPtr PredictCCSeqLoc (SeqLocPtr slp,
PccDatPtr pccp);
extern SeqLocPtr FilterCC (FloatHiPtr score, FloatHi percentcut,
Int4 length, Int4 linker, SeqIdPtr sip,
Boolean flagBoundaryCondition);
extern SeqLocPtr FilterCCVS (FloatHiPtr score, FloatHi percentcut,
Int4 length, Int4 linker, SeqIdPtr sip,
Boolean flagBoundaryCondition);
#ifdef __cplusplus
}
#endif
#endif
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