/usr/include/ncbi/salprop.h is in libncbi6-dev 6.1.20120620-10.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 | /* salprop.h
* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information (NCBI)
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government do not place any restriction on its use or reproduction.
* We would, however, appreciate having the NCBI and the author cited in
* any work or product based on this material
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* ===========================================================================
*
* File Name: salprop.h
*
* Author: Colombe Chappey
*
* Version Creation Date: 8/20/99
*
* File Description:
*
* Modifications:
* --------------------------------------------------------------------------
* Date Name Description of modification
* ------- ---------- -----------------------------------------------------
*
*
* ==========================================================================
*/
#ifndef _SALPROP_
#define _SALPROP_
#include <salsa.h>
#define first_GBFeat 15
#define number_GBFeat 75
static CharPtr GBFeat[number_GBFeat] = {
"allele", "attenuator", "C_region", "CAAT_signal", "CDS",
"conflict", "D-loop", "D_segment", "enhancer", "exon",
"GC_signal", "gene", "intron", "J_segment", "LTR",
"mat_peptide", "misc_binding", "misc_difference",
"misc_feature", "misc_recomb", "misc_RNA", "misc_signal",
"misc_structure", "modified_base", "mutation", "N_region",
"old_sequence", "polyA_signal", "polyA_site", "precursor_RNA",
"prim_transcript", "primer_bind", "promoter", "protein_bind", "RBS",
"repeat_region", "repeat_unit", "rep_origin", "S_region", "satellite",
"sig_peptide", "source", "stem_loop", "STS", "TATA_signal",
"terminator", "transit_peptide", "unsure", "V_region", "V_segment",
"variation", "virion", "3'clip", "3'UTR", "5'clip", "5'UTR",
"-10_signal", "-35_signal", "site_ref","REGION", "COMMENT","BOND","SITE",
"RSITE","USER","TXINIT","NUM","PSEC_STR","NON_STD_RESIDUE","HET",
"BIOSRC","preprotein","mat_peptide_aa","sig_peptide_aa",
"transit_peptide_aa" };
NLM_EXTERN void PropagateFeatureBySeqLock (SeqAnnotPtr sap, Uint4 source_bspitemID, Uint2 target_entityID, SeqEntryPtr target_sep, ValNodePtr seqfeat, Uint1 gap_choice);
NLM_EXTERN void PropagateFeatureByApply (PropaStructPtr psp);
NLM_EXTERN PropaStructPtr CreatePropaStruc (SeqIdPtr target_id,
SeqIdPtr source_id, SeqAlignPtr salp);
NLM_EXTERN Boolean MergeFunc (SeqIdPtr target_id, SeqIdPtr source_id, SeqIdPtr merge_id,
SeqAlignPtr salp, Int4 fromseq2, Int4 toseq2,
ValNodePtr sqlocs, Boolean spliteditmode, Boolean keep_protID);
NLM_EXTERN Boolean FeatListToProp (EditAlignDataPtr adp, ValNodePtr vnpfeat);
#endif
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