/usr/include/ncbi/salpedit.h is in libncbi6-dev 6.1.20120620-10.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 | /* salpedit.h */
#ifndef __SALPEDIT__
#define __SALPEDIT__
#ifdef __cplusplus
extern "C" {
#endif
typedef int (LIBCALLBACK *SeqAlignSortCB) (VoidPtr, VoidPtr);
NLM_EXTERN SeqAlignPtr LIBCALL SeqAlignBioseqDeleteById (SeqAlignPtr salphead, SeqIdPtr sip);
NLM_EXTERN Pointer LIBCALL SeqAlignBioseqDeleteByIdFromSeqEntry (SeqEntryPtr sep, SeqIdPtr sip);
NLM_EXTERN ValNodePtr FilterSeqAlign(SeqAlignPtr align, SeqIdPtr s_sip, Uint1Ptr p_strand);
NLM_EXTERN SeqAlignPtr SeqAlignConvertDspToDdpList(SeqAlignPtr align);
NLM_EXTERN SeqAlignPtr FilterDenseSegAlign(SeqAlignPtr align, SeqIdPtr sip);
NLM_EXTERN Boolean is_loc_overlap(SeqLocPtr loc_1, SeqLocPtr loc_2, Int4Ptr min_val, Int4Ptr max_val, Int4 gap_len, Int4 max_align_size, Int4Ptr p_gap_val);
NLM_EXTERN Int4 find_matching_position(DenseSegPtr dsp, Int4 pos, Int2 pos_order);
NLM_EXTERN Boolean select_overlap_loc(SeqLocPtr loc_1_1, SeqLocPtr loc_2_1, SeqLocPtr loc_1_2, SeqLocPtr loc_2_2, Int2Ptr p_order);
NLM_EXTERN Int4 get_align_len_in_overlap (SeqAlignPtr align, Int4 from, Int4 to, Int2 order);
NLM_EXTERN Boolean merge_two_align(SeqAlignPtr align_1, SeqAlignPtr align_2, Int4 from, Int4 to, Int2 order);
NLM_EXTERN void SeqAlignReverse(SeqAlignPtr align, Int2 order);
NLM_EXTERN Boolean MergeTwoAlignList (SeqAlignPtr h_align_1, SeqAlignPtr PNTR p_align_2, Int4 from, Int4 to, Int2 order);
NLM_EXTERN SeqAlignPtr SeqAlignSort(SeqAlignPtr salp,SeqAlignSortCB sort_fn);
NLM_EXTERN SeqAlignPtr SeqAlignSortByLength(SeqAlignPtr salp);
NLM_EXTERN SeqAlignPtr SeqAlignSortByScore(SeqAlignPtr salp);
NLM_EXTERN SeqAlignPtr SeqAlignSortByEvalue(SeqAlignPtr salp);
NLM_EXTERN SeqAlignPtr SeqAlignSortByStart(SeqAlignPtr salp,Int2 order);
NLM_EXTERN SeqAlignPtr SeqAlignSortByRegion(SeqAlignPtr salp,Int2 order);
NLM_EXTERN SeqAlignPtr find_best_align(SeqAlignPtr align, Int4Ptr pmax_score);
NLM_EXTERN void SeqAlignSwapOrder(SeqAlignPtr align);
NLM_EXTERN SeqAlignPtr LIBCALL SeqAlignListReverseStrand (SeqAlignPtr salp);
NLM_EXTERN SeqAlignPtr LIBCALL SeqAlignDup (SeqAlignPtr salp);
NLM_EXTERN SeqAlignPtr LIBCALL SeqAlignListDup (SeqAlignPtr salp);
#ifdef __cplusplus
}
#endif
#endif
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