/usr/include/ncbi/parsegb.h is in libncbi6-dev 6.1.20120620-10.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 | /* gbparlex.h
* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
* File Name: gbparse.h
*
* Author: Karl Sirotkin
*
* $Log: parsegb.h,v $
* Revision 6.1 1999/04/06 19:42:56 bazhin
* Changes, related to flat2asn's ACCESSION.VERSION parsing.
*
* Revision 6.0 1997/08/25 18:06:52 madden
* Revision changed to 6.0
*
* Revision 5.1 1997/06/19 18:38:34 vakatov
* [WIN32,MSVC++] Adopted for the "NCBIOBJ.LIB" DLL'ization
*
* Revision 5.0 1996/05/28 13:23:23 ostell
* Set to revision 5.0
*
* Revision 4.1 1995/11/17 21:28:35 kans
* asn2ff now uses gather (Tatiana)
*
* Revision 1.2 1995/05/15 21:46:05 ostell
* added Log line
*
*
*/
#ifndef _NCBI_GBParse_
#define _NCBI_GBParse_
#ifndef _ASNTOOL_
#include <asn.h>
#endif
#ifndef _NCBI_General_
#include <objgen.h>
#endif
#ifndef _NCBI_Seqloc_
#include <objloc.h>
#endif
#undef NLM_EXTERN
#ifdef NLM_IMPORT
#define NLM_EXTERN NLM_IMPORT
#else
#define NLM_EXTERN extern
#endif
typedef void (*Nlm_gbparse_errfunc) PROTO((CharPtr, CharPtr));
typedef Int4 (*Nlm_gbparse_rangefunc) PROTO ((Pointer, SeqIdPtr ));
NLM_EXTERN int Nlm_gbparselex PROTO(( CharPtr linein, ValNodePtr PNTR lexed));
NLM_EXTERN int Nlm_gbparselex_ver PROTO(( CharPtr linein, ValNodePtr PNTR lexed, Boolean accver));
NLM_EXTERN CharPtr Nlm_non_white PROTO(( CharPtr ch));
NLM_EXTERN ValNodePtr Nlm_gbparse_lexfree PROTO(( ValNodePtr anp));
NLM_EXTERN SeqLocPtr Nlm_gbparseint PROTO(( CharPtr raw_intervals, Boolean PNTR keep_rawPt, Boolean PNTR sites, int PNTR num_errsPt, SeqIdPtr seq_id));
NLM_EXTERN SeqLocPtr Nlm_gbparseint_ver PROTO(( CharPtr raw_intervals, Boolean PNTR keep_rawPt, Boolean PNTR sites, int PNTR num_errsPt, SeqIdPtr seq_id, Boolean accver));
NLM_EXTERN CharPtr Nlm_gbparse_point PROTO((ValNodePtr, ValNodePtr));
NLM_EXTERN int deal_with_complement PROTO ((ValNodePtr PNTR, int PNTR, CharPtr, ValNodePtr));
NLM_EXTERN SeqLocPtr Nlm_gbloc PROTO((Boolean PNTR, int PNTR, Boolean PNTR, ValNodePtr PNTR, ValNodePtr, int PNTR, SeqIdPtr));
NLM_EXTERN SeqLocPtr Nlm_gbloc_ver PROTO((Boolean PNTR, int PNTR, Boolean PNTR, ValNodePtr PNTR, ValNodePtr, int PNTR, SeqIdPtr, Boolean));
NLM_EXTERN SeqLocPtr Nlm_gbreplace PROTO((Boolean PNTR, int PNTR, Boolean PNTR, ValNodePtr PNTR, ValNodePtr , int PNTR, SeqIdPtr));
NLM_EXTERN SeqLocPtr Nlm_gbreplace_ver PROTO((Boolean PNTR, int PNTR, Boolean PNTR, ValNodePtr PNTR, ValNodePtr , int PNTR, SeqIdPtr, Boolean));
NLM_EXTERN SeqLocPtr Nlm_gbint PROTO((Boolean PNTR, ValNodePtr PNTR, ValNodePtr , int PNTR, SeqIdPtr));
NLM_EXTERN SeqLocPtr Nlm_gbint_ver PROTO((Boolean PNTR, ValNodePtr PNTR, ValNodePtr , int PNTR, SeqIdPtr, Boolean));
NLM_EXTERN SeqPntPtr Nlm_gbpintpnt PROTO(( SeqLocPtr, SeqIntPtr PNTR));
NLM_EXTERN void Nlm_gbload_number PROTO((Int4 PNTR, IntFuzzPtr PNTR, Boolean PNTR, ValNodePtr PNTR, ValNodePtr , int PNTR, int));
NLM_EXTERN SeqLocPtr Nlm_gbparse_better_be_done PROTO((int PNTR num_errPt, ValNodePtr currentPt, ValNodePtr headPt, SeqLocPtr ret_so_far, Boolean PNTR keep_rawPt, int paren_count));
NLM_EXTERN void do_Nlm_gbparse_error PROTO((CharPtr msg, CharPtr details));
NLM_EXTERN void Nlm_install_gbparse_error_handler PROTO((Nlm_gbparse_errfunc));
NLM_EXTERN void Nlm_install_gbparse_range_func PROTO((Pointer, Nlm_gbparse_rangefunc));
NLM_EXTERN void Nlm_gbparse_error PROTO((CharPtr, ValNodePtr, ValNodePtr));
#define gbparselex Nlm_gbparselex
#define gbparse_lexfree Nlm_gbparse_lexfree
#define gbparseint Nlm_gbparseint
#define install_gbparse_error_handler Nlm_install_gbparse_error_handler
#define install_gbparse_range_func Nlm_install_gbparse_range_func
#undef NLM_EXTERN
#ifdef NLM_EXPORT
#define NLM_EXTERN NLM_EXPORT
#else
#define NLM_EXTERN
#endif
#endif
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