/usr/include/ncbi/mkbioseq.h is in libncbi6-dev 6.1.20120620-10.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 | /* mkbioseq.h
*
* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information (NCBI)
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government do not place any restriction on its use or reproduction.
* We would, however, appreciate having the NCBI and the author cited in
* any work or product based on this material
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* ===========================================================================
*
* File Name: mkbioseq.h
*
* Author: Ken Addess
*
* $Log: mkbioseq.h,v $
* Revision 6.1 1998/07/17 18:56:01 madej
* Created by Ken Addess.
*
*/
/*****************************************************************************
*
* mkbioseq.h
*
*****************************************************************************/
#ifndef _MKBIOSEQ_
#define _MKBIOSEQ_
#include <ncbi.h>
#include <asn.h>
#include <mmdbapi.h>
#include "strimprt.h"
#define MAXNUM 50
SeqEntryPtr LIBCALL CreateSeqEntry PROTO
((BiostrucSourcePtr bssp, BiostrucGraphPtr bsgp, BiostrucModelPtr bsmp, ValNodePtr descr, Int4 nchn));
SeqIdPtr LIBCALL MakePDBId PROTO((BiostrucSourcePtr bssp, MoleculeGraphPtr mgp, DbtagPtr dtp));
SeqIdPtr LIBCALL MakeLocalID PROTO((Int4 mid, MoleculeGraphPtr mgp, DbtagPtr dtp));
SeqIdPtr LIBCALL MakeGId PROTO((Int4 gi));
BiostrucPtr LIBCALL readBiostruc PROTO((CharPtr filename, Int2 mode, Int4 mdlLvl));
ValNodePtr LIBCALL MakeBioseqDescr PROTO((MoleculeGraphPtr mgp, ValNodePtr bioseq_descr));
Uint1 LIBCALL MakeBioseqMol PROTO((MoleculeGraphPtr mgp));
Int4 LIBCALL CountNumOfResidues PROTO((MoleculeGraphPtr mgp));
Boolean LIBCALL isBiopoly PROTO((Int4 molecule_id, MoleculeGraphPtr currentbp));
Boolean LIBCALL isHet PROTO((Int4 molecule_id, MoleculeGraphPtr currenthet));
Int4 LIBCALL getHetIdx PROTO((Int4 molecule_id, MoleculeGraphPtr currenthet));
ByteStorePtr LIBCALL AddSeqData PROTO((MoleculeGraphPtr mgp, Uint1 mol, Int4 length, BiostrucGraphPtr bsgp, BiostrucResidueGraphSetPtr stdDictionary));
CharPtr LIBCALL getStdOlcode PROTO
((Int4 standard_graphs_id, Int4 residue_graph_id, BiostrucResidueGraphSetPtr std));
CharPtr LIBCALL getNstdOlcode PROTO((ResidueGraphPtr nrg));
ResidueGraphPtr LIBCALL getNstdResGraph PROTO((Int4 rgid, BiostrucGraphPtr bsgp));
CharPtr LIBCALL rmvSpace PROTO((CharPtr str));
SeqAnnotPtr LIBCALL AddNstdSeqAnnot PROTO((MoleculeGraphPtr mgp, SeqIdPtr id, BiostrucGraphPtr bsgp));
Boolean LIBCALL isNstd PROTO((ResidueGraphPtr rgp));
SeqAnnotPtr LIBCALL AddSecDomToSeqAnnot PROTO((BiostrucFeaturePtr bsfp, CharPtr name, SeqAnnotPtr seq_annot, SeqIdPtr id, Int4 num));
Int4 LIBCALL findChnidx PROTO((Int4 mol_id, Int4 nbp, MoleculeGraphPtr bp));
ValNodePtr LIBCALL MakeHetValNode PROTO((MoleculeGraphPtr nhet, BiostrucResidueGraphSetPtr stdDictionary, ResidueGraphPtr rg));
CharPtr LIBCALL getResNam PROTO((ResidueGraphPntrPtr rgpp, BiostrucResidueGraphSetPtr stdDictionary, ResidueGraphPtr rg));
CharPtr LIBCALL getResComm PROTO((ResidueGraphPntrPtr rgpp, BiostrucResidueGraphSetPtr stdDictionary, ResidueGraphPtr rg));
SeqAnnotPtr LIBCALL AddHetToSeqAnnot
PROTO((SeqAnnotPtr seq_annot, SeqIdPtr id, ValNodePtr hetval, ValNodePtr pvnThePoints, Int4 rescount));
SeqAnnotPtr LIBCALL AddDisulToSeqAnnot PROTO((SeqAnnotPtr seq_annot, Int4 residx1, Int4 residx2, SeqIdPtr id1, SeqIdPtr id2));
Int4 LIBCALL
getAtomElementIdx PROTO ((Int4 molecule_id, Int4 residue_id, Int4 atom_id, BiostrucGraphPtr bsgp, BiostrucResidueGraphSetPtr stdDictionary));
ResidueGraphPtr LIBCALL getResGraph PROTO((ResidueGraphPntrPtr rgpp, BiostrucGraphPtr bsgp, BiostrucResidueGraphSetPtr stdDictionary));
#endif
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