/usr/include/ncbi/medutil.h is in libncbi6-dev 6.1.20120620-10.
This file is owned by root:root, with mode 0o644.
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* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
* File Name: medutil.h
*
* Author: James Ostell
*
* Version Creation Date: 8/31/93
*
* $Revision: 6.3 $
*
* File Description: * File Description: Medline Utilities for MedArch
* Assumes user calls MedArchInit and Fini
* Uses MedArch to match citations, lookup Medline uids, and ISO jta's
*
* Modifications:
* --------------------------------------------------------------------------
* Date Name Description of modification
* ------- ---------- -----------------------------------------------------
*
* ==========================================================================
*
*
* RCS Modification History:
* $Log: medutil.h,v $
* Revision 6.3 2007/12/04 20:06:35 bazhin
* Added Boolean variable "merge_ids" to merge input article
* ids with ones from med server.
*
* Revision 6.2 2003/03/25 19:14:50 bazhin
* Function "ten_authors()" became public (from static).
*
* Revision 6.1 2000/08/18 17:01:02 kans
* added FetchPubPmId, enhanced FixPubEquiv to handle records with pmid but no muid
*
* Revision 6.0 1997/08/25 18:35:50 madden
* Revision changed to 6.0
*
* Revision 5.0 1996/05/28 14:11:11 ostell
* Set to revision 5.0
*
* Revision 4.0 1995/07/26 13:55:12 ostell
* force revision to 4.0
*
* Revision 1.6 1995/05/24 16:14:56 tatiana
* add in_press() to avoid lookup for in press articles
*
* Revision 1.4 1995/05/17 17:54:08 epstein
* add RCS log revision history
*
*/
#ifndef _NCBI_MedUtil_
#define _NCBI_MedUtil_
#ifndef _NCBI_SeqUtil_
#include <sequtil.h>
#endif
#ifdef __cplusplus
extern "C" {
#endif
#define GB_REF 0
#define EMBL_REF 1
#define SP_REF 2
#define PIR_REF 3
#define PDB_REF 4
#define ML_REF 5
typedef struct findpubstr {
Boolean always_look; /* if TRUE, look up even if muid in Pub-equiv */
Boolean replace_cit; /* if TRUE, replace Cit-art w/ replace from MEDLINE */
Int4 lookups_attempted, /* citartmatch tries */
lookups_succeeded, /* citartmatch worked */
fetches_attempted, /* FetchPubs tried */
fetches_succeeded; /* FetchPubs that worked */
Boolean merge_ids; /* If TRUE then merges Cit-art.ids from
input Cit-sub and one gotten from
med server. */
} FindPubOption, PNTR FindPubOptionPtr;
/* SeqEntryExplore callback to fix all Pubs */
/* "data" is a FindPubOptionPtr */
void print_pub(ValNodePtr pub, Boolean found, Boolean auth, Int4 muid);
void FindPub PROTO((SeqEntryPtr sep, Pointer data, Int4 index, Int2 indent));
/* Converts any Pub to ISO/GenBank style */
ValNodePtr FixPub PROTO((ValNodePtr pub, FindPubOptionPtr fpop));
/* Converts MedlineEntry to Pub-equiv */
ValNodePtr SplitMedlineEntry PROTO((MedlineEntryPtr mep));
/* Process PubEquiv to ISO/GenBank style */
ValNodePtr FixPubEquiv PROTO((ValNodePtr pube, FindPubOptionPtr fpop));
/* gets Cit-art in ISO/GenBank style given Muid */
ValNodePtr FetchPub PROTO((Int4 muid));
/* gets Cit-art in ISO/GenBank style given Pmid */
ValNodePtr FetchPubPmId PROTO((Int4 pmid));
/* check if a string all upper case */
Boolean AllUpperCase PROTO((CharPtr p ));
/* splits ML name into parts */
void SplitMlAuthorName PROTO(( CharPtr name, CharPtr last, CharPtr initials, CharPtr suffix ));
/* makes ML Cit-art to ISO/GenBank style */
ValNodePtr MedlineToISO PROTO((ValNodePtr tmp));
/* makes std Author name from string */
ValNodePtr get_std_auth PROTO((CharPtr token, Uint1 format));
Boolean in_press PROTO ((CitArtPtr cit));
Boolean ten_authors PROTO((CitArtPtr art, CitArtPtr art_tmp));
#ifdef __cplusplus
}
#endif
#endif
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