/usr/include/ncbi/medarch.h is in libncbi6-dev 6.1.20120620-10.
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* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
* File Name: medarch.h
*
* Author: Epstein
*
* Version Creation Date: 04/12/93
*
* $Revision: 6.0 $
*
* File Description:
* API for Medline Archive service
*
* Modifications:
* --------------------------------------------------------------------------
* Date Name Description of modification
* ------- ---------- -----------------------------------------------------
* 010296 grisha Add prototypes for MRI and Accessions lookup
* 050896 grisha Add prototypes for PubMed support
* 021196 grisha Add prototypes for MEDLARS entry support
*
* ==========================================================================
*
*
* RCS Modification History:
* $Log: medarch.h,v $
* Revision 6.0 1997/08/25 18:35:44 madden
* Revision changed to 6.0
*
* Revision 5.3 1997/02/11 22:41:47 grisha
* Add code and prototypes for support MEDLARS entry
*
* Revision 5.2 1996/12/17 20:32:30 grisha
* update interface to support PubmedEntry
*
* Revision 5.1 1996/07/23 19:36:18 grisha
* Add new function to return Medline entry in new format
*
* Revision 5.0 1996/05/28 14:11:11 ostell
* Set to revision 5.0
*
* Revision 4.3 1996/05/08 20:58:36 grisha
* implement new set of functions for PubMed support
*
* Revision 4.2 1996/05/03 14:35:19 grisha
* Add new functions and error codes for PubMed support
*
* Revision 4.1 1996/01/05 21:40:44 grisha
* Add two new function for MRI and Accession lookup. Now
* this function do not call MedArch server.
*
* Revision 4.0 1995/07/26 13:55:12 ostell
* force revision to 4.0
*
* Revision 1.2 1995/05/17 17:53:58 epstein
* add RCS log revision history
*
*/
#ifndef __MEDARCHH__
#define __MEDARCHH__ medarchh
/***************************************************************************/
/* INCLUDES */
/***************************************************************************/
#include <mapmla.h>
/***************************************************************************/
/* TYPEDEFS */
/***************************************************************************/
typedef enum {
kMedArchDdbj = 1, /* DNA Data Bank of Japan */
kMedArchCarbBank = 2, /* Carbohydrate Structure Database */
kMedArchEmbl = 3, /* EMBL Data Library */
kMedArchHdb = 4, /* Hybridoma Data Bank */
kMedArchGenBank = 5, /* GenBank */
kMedArchHgml = 6, /* Human Gene Map Library */
kMedArchMim = 7, /* Mendelian Inheritance in Man */
kMedArchMsd = 8, /* Microbial Strains Database */
kMedArchPdb = 9, /* Protein Data Bank (Brookhaven) */
kMedArchPir = 10, /* Protein Identification Resource */
kMedArchPrfseqdb = 11, /* Protein Research Foundation (Japan) */
kMedArchPsd = 12, /* Protein Sequence Database (Japan) */
kMedArchSwissprot = 13 /* SwissProt */
} EMedArchTypeOfXref;
/***************************************************************************/
/* DEFINES */
/***************************************************************************/
#define MEDARCH_SERV_RETRIES 2 /* The number of retries to get a server */
/***************************************************************************/
/* FUNCTION PROTOTYPES */
/***************************************************************************/
#ifdef __cplusplus
extern "C" {
#endif
/* Initialization/Termination */
Boolean MedArchInit PROTO(( /* Initialize MedArch interface */
void
));
Boolean MedArchFini PROTO(( /* Close MedArch interface */
void
));
/* Generate list of articles using Medline id(uids) or PubMed id(pmid) */
Int4 MedArchPubmedEntryListGetPmId PROTO(( /* Create list of Med. Ent. */
PubmedEntryPtr PNTR result, /* To store data list (O) */
Int4 nupmid, /* Number if pmids (I) */
Int4Ptr pmids, /* Array of pmids (I/O) */
Boolean mark_missing /* Mark missing flag (I) */
));
Int4 MedArchPubmedEntryListGetUid PROTO(( /* Create list of Med. Ent.*/
PubmedEntryPtr PNTR result, /* To store data list (O) */
Int4 numuid, /* Number if ids (I) */
Int4Ptr uids, /* Array of ids (I/O) */
Boolean mark_missing /* Mark missing flag (I) */
));
Int4 MedArchMedlineEntryListGet PROTO(( /* Create list of Med. Ent.*/
MedlineEntryPtr PNTR result, /* To store data list (O) */
Int4 numuid, /* Number if ids (I) */
Int4Ptr uids, /* Array of ids (I/O) */
Boolean mark_missing /* Mark missing flag (I) */
));
/* Generate single article entry using Medline id(uid) or PubMed id(pmid) */
PubmedEntryPtr MedArchPubmedEntryGetPmId PROTO(( /* Get entry by PubMed id */
Int4 pmid /* PubMed unique id */
));
PubmedEntryPtr MedArchPubmedEntryGetUid PROTO(( /* Get entry by Medline id */
Int4 uid /* Medline unique id */
));
MedlineEntryPtr MedArchMedlineEntryGet PROTO(( /* Get entry by Medline id */
Int4 uid /* Medline unique id */
));
MedlarsEntryPtr MedArchMedlarsEntryGetPmId PROTO(( /* Get entry by PubMed id */
Int4 pmid /* PubMed unique id */
));
MedlarsEntryPtr MedArchMedlarsEntryGetUid PROTO(( /* Get entry by Medline id */
Int4 uid /* Medline unique id */
));
/* Generate ASN.1 Publication Set using list of PubMed or Medline ids */
Int4 MedArchPubSetCreatePmId PROTO(( /* Create PubSet using PubMed ids */
AsnIoPtr aip, /* Output ASN.1 stream (I/O) */
Int4 numpmid, /* Number of ids (I) */
Int4Ptr pmids, /* Array of pmids (I/O) */
Boolean mark_missing /* Mark missing flag (I) */
));
Int4 MedArchPubSetCreateUid PROTO(( /* Create PubSet using Medline ids */
AsnIoPtr aip, /* Output ASN.1 stream (I/O) */
Int4 numuid, /* Number of ids (I) */
Int4Ptr uids, /* Array of muids (I/O) */
Boolean mark_missing /* Mark missing flag (I) */
));
Int4 MedArchPubSetCreate PROTO(( /* Create PubSet using Medline ids */
AsnIoPtr aip, /* Output ASN.1 stream (I/O) */
Int4 numuid, /* Number of ids (I) */
Int4Ptr uids, /* Array of muids (I/O) */
Boolean mark_missing /* Mark missing flag (I) */
));
/* Journal database titles lookup */
Int4 MedArchGetTitles PROTO((
CharPtr PNTR titles_found,
Int1Ptr title_types_found,
CharPtr title_to_lookup,
Int1 request_type,
Int1 response_type,
Int4 max_titles_to_find
));
/* Generate citation information for id */
ValNodePtr MedArchGetPubPmId PROTO(( /* Create citation for PubMed id */
Int4 pmid /* Article PubMed id (I) */
));
ValNodePtr MedArchGetPub PROTO(( /* Create citation for Medline id */
Int4 uid /* Article Medline id (I) */
));
/* Citation matching functions */
ValNodePtr MedArchCitMatchList PROTO(( /* Find PubMed ids are match */
ValNodePtr pub, /* Citation (I) */
Int4Ptr /* Error code (O) */
));
Int4 MedArchCitMatchPmId PROTO(( /* Find article PubMed id */
ValNodePtr pub /* Citation (I) */
));
Int4 MedArchCitMatch PROTO(( /* Find article Medline id */
ValNodePtr pub /* Citation (I) */
));
/* Generate list of PubMed or Medline id for selected MRI */
ValNodePtr MedArchGetMriPmids PROTO(( /* Generate list of PubMed ids */
Int4 mri /* Machine-readable id (I) */
));
ValNodePtr MedArchGetMriUids PROTO(( /* Generate list of Medline ids */
Int4 mri /* Machine-readable id (I) */
));
/* Generate list of PubMed or Medline id for selected accession */
ValNodePtr MedArchGetAccPmids PROTO(( /* Generate list of PubMed ids */
Int4 iCode, /* Type of xref (I) */
CharPtr lpAccNum /* The citation/accession number (I) */
));
ValNodePtr MedArchGetAccUids PROTO(( /* Generate list of Medline ids */
Int4 iCode, /* Type of xref (I) */
CharPtr lpAccNum /* The citation/accession number (I) */
));
/* Medline to PubMed identifier convertor */
Int4 MedArchPm2Mu PROTO(( /* Convert PubMed id to Medline id */
Int4 pmid /* PubMed id (I) */
));
Int4 MedArchMu2Pm PROTO(( /* Convert Medline id to PubMed id */
Int4 uid /* Medline id (I) */
));
#ifdef __cplusplus
}
#endif
#endif /* __MEDARCHH__ */
/*END*/
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