/usr/include/ncbi/blast_dust.h is in libncbi6-dev 6.1.20120620-10.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
* Author: Tom Madden
*
*/
/** @file blast_dust.h
* DUST filtering functions. (shouldn't this be merged with blast_filter?)
* @todo FIXME: include reference?
*/
#ifndef ALGO_BLAST_CORE__BLAST_DUST__H
#define ALGO_BLAST_CORE__BLAST_DUST__H
#ifdef __cplusplus
extern "C" {
#endif
/** endpoints
* linked list of low-complexity offsets.
*/
typedef struct DREGION {
struct DREGION* next;
Int4 from, to;
} DREGION;
Int4 DustSegs (Uint1* sequence, Int4 length, Int4 start,
DREGION* reg,
Int4 level, Int4 windowsize, Int4 linker);
SeqLocPtr BioseqDustEx (BioseqPtr bsp, Int4 level, Int4 windowsize, Int4 linker);
SeqLocPtr SeqLocDustEx (SeqLocPtr this_slp, Int4 level, Int4 window, Int4 linker);
#ifdef __cplusplus
}
#endif
#endif /* !ALGO_BLAST_CORE__BLAST_DUST__H */
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