/usr/include/libMUSCLE-3.7/libMUSCLE/enums.h is in libmuscle-3.7-dev 3.7+4565-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 | // libMUSCLE/enums.h
// Define enum types.
// Exploit macro hacks to avoid lots of repetetive typing.
// Generally I am opposed to macro hacks because of the
// highly obscure code that results, but in this case it
// makes maintenance much easier and less error-prone.
// The idea is that this file can be included in different
// places with different definitions of s (Start), c (Case)
// and e (End). See libMUSCLE/types.h.
s(ALPHA)
c(ALPHA, Amino)
c(ALPHA, DNA)
c(ALPHA, RNA)
e(ALPHA)
s(SEQTYPE)
c(SEQTYPE, Protein)
c(SEQTYPE, DNA)
c(SEQTYPE, RNA)
c(SEQTYPE, Auto)
e(SEQTYPE)
s(ROOT)
c(ROOT, Pseudo)
c(ROOT, MidLongestSpan)
c(ROOT, MinAvgLeafDist)
e(ROOT)
s(CLUSTER)
c(CLUSTER, UPGMA)
c(CLUSTER, UPGMAMax)
c(CLUSTER, UPGMAMin)
c(CLUSTER, UPGMB)
c(CLUSTER, NeighborJoining)
e(CLUSTER)
s(JOIN)
c(JOIN, NearestNeighbor)
c(JOIN, NeighborJoining)
e(JOIN)
s(LINKAGE)
c(LINKAGE, Min)
c(LINKAGE, Avg)
c(LINKAGE, Max)
c(LINKAGE, NeighborJoining)
c(LINKAGE, Biased)
e(LINKAGE)
s(DISTANCE)
c(DISTANCE, Kmer6_6)
c(DISTANCE, Kmer20_3)
c(DISTANCE, Kmer20_4)
c(DISTANCE, Kbit20_3)
c(DISTANCE, Kmer4_6)
c(DISTANCE, PctIdKimura)
c(DISTANCE, PctIdLog)
c(DISTANCE, PWKimura)
c(DISTANCE, PWScoreDist)
c(DISTANCE, ScoreDist)
c(DISTANCE, Edit)
e(DISTANCE)
s(PPSCORE)
c(PPSCORE, LE)
c(PPSCORE, SP)
c(PPSCORE, SV)
c(PPSCORE, SPN)
e(PPSCORE)
s(SEQWEIGHT)
c(SEQWEIGHT, None)
c(SEQWEIGHT, Henikoff)
c(SEQWEIGHT, HenikoffPB)
c(SEQWEIGHT, GSC)
c(SEQWEIGHT, ClustalW)
c(SEQWEIGHT, ThreeWay)
e(SEQWEIGHT)
s(OBJSCORE)
c(OBJSCORE, SP) // Sum of Pairs of sequences
c(OBJSCORE, DP) // Dynamic Programming score
c(OBJSCORE, XP) // Cross Pairs = sum of pairs between two MSAs
c(OBJSCORE, PS) // sum of Prof-Seq score for all seqs in MSA
c(OBJSCORE, SPF) // sum of pairs, fast approximation
c(OBJSCORE, SPM) // sp if <= 100 seqs, spf otherwise
e(OBJSCORE)
s(TERMGAPS)
c(TERMGAPS, Full)
c(TERMGAPS, Half)
c(TERMGAPS, Ext)
e(TERMGAPS)
#undef s
#undef c
#undef e
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