/usr/share/gpp4/environ.def is in libgpp4-0 1.3.1-0ubuntu4.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 | # -*-sh-*-
# List of standard `logical names' with types (in, out or inout)
# and default filename extensions. This list is read in at run time.
#
# ? indicates checked in ccp4 progs/libs and no known use
#
ABCOEFFS=inout.coe # Optional Fourier terms (fft)
ABSIN=in.dat # absorption data (absurd)
ANGDAT=in.prt # angles library file
ANGOUT=out.dih # angles o/p
#ATCONT=inout.dat # ?
ATOMOP=out.brk # sfall (but scratch)
ATOMSF=in.lib # sfall
ATOUT=out.brk # vecref
ATS=inout.brk # ? (.scr in default.def)
#ATSORT=inout.brk # ?
BADSPOT=inout.spt # mosflm
BONESIN=in.bon # bones2pdb
#BREG=inout.dat # ?
#BRKIN=in.brk # ?
CHECKS=inout.chk # prolsq
CLMN=inout.cof # amore
#CMPAT=inout.dat # ?
#CMPOUT=out.cmp # no longer in compar
CMPTMP=inout.scr # compar
COEFFS=inout.cof # almn
#CORRIN=in.dat # ?
#CORROUT=out.dat # ?
CROSSECDATA=in.lib # crossec
CRUNCH2_CDAT=inout.dat # crunch2
CRUNCH2ASC=in.lib # crunch2
CRUNCH2SEED=in.lib # crunch2
#CURVY=inout.dat # ?
DATIN=in.dat # asc_2_p84 only
DATOUT=out.out # p84_2_asc only
#DATOUTTMP=inout.dat # ?
DELTAS=out.dat # lsqkab
#DENSITY=inout.ind # ?
DICTPROTN=in.dic # protin
DICTION=in.dic # restrain
DIFFIN=in.dat # diffop
DIFFOUT=out.dat # diffin
DISKIO=inout.scr # testlib, fft, sfall
#ENVIN=in.map # skewplanes
EXCHANGE=inout.dat # exchange
FCALC=inout.scr # sfall
FFTHKLSCR=inout.scr # fft, sfall scratch file
#FOBS=inout.scr # (no longer in sfall)
#GENERIN=in.dat # skewplanes (generate)
GENFILE=inout.gen # abscale, oscgen (mosflm distrib)
GRADMAT=inout.mat # prolsq
HDATA=in.his # squash (not CCP4)
HESS=inout.scr # sfall
HISTLIB=in.lib # dm
HKLIN=in.mtz # general reflexion i/p file
#HKLMUIN=in.mu # ?
HKLOUT=out.mtz # general reflexion o/p file
HKLPCK=inout.car # amore
#INDICES6=inout.ind # ?
#INT1DAT=inout.dat # ?
#INTERIN=in.dat # skewplanes (interpol)
INTP1=inout.scr # sfall
ITAPE3=inout.scr # polarrfn
KHCONN=inout.khc # distang
LCF=inout.lcf # exchange
#LIMITS=out.lim # ?
LSQOP=out.brk # lsqkab
MAPBRK=inout.mbk # mapbrick (not ccp4)
MAPIN=in.map # general map input file
MAPOUT=inout.map # general map output file
#MAPPRT=out.mpt # ?
#MAPSKEW=inout.map # skewplanes
MASK=inout.msk # envelope, flatmap
#MATCHIN=inout.ind # ?
#MATDAT=out.out # skewplanes (matrices)
MATRIX=inout.mat # skewbrk (not ccp4), superpose, deriv
#MOSFLMDAT=in.dat # ?
KEYWORD=inout.scr # oasis
SIGNDT=inout.scr # oasis
PROTDT=inout.scr # oasis
SCRA8=inout.scr # oasis
SIGMA2=inout.scr # oasis
MTZ2VSCR=inout.scr # mtz2various
#MTZIN=in.mtz # ?
#MTZOUT=inout.mtz # ?
#NEWCOEFF=inout.dat # ?
NCSIN=in.msk # dm
NEWPARM=out.com # mlphare
ODFILE=inout.od # stills (mosflm distrib.)
#OLDCOEFF=inout.dat # ?
#PARAMSIN=in.dat # skewplanes
#PARAMSOUT=out.dat # skewplanes
PEAK_LIST=out.out # mapsig
#PEKIN=inout.pea # ?
#PHI=inout.scr # sfall (no longer used)
PLOT=inout.plo # plot84 stuff
PLOTFILE=inout.plt # asc_2_p84, p84_2_asc
PLOTIN=in.plt # ribbon stuff (not ccp4)
PLOTOUT=out.plt # ribrot, splitd (not ccp4)
PMF_CDAT=inout.dat # pmf
PMFASC=in.lib # pmf
PMOSFLMDAT=in.dat # mosflm
PRJOUT=out.out # distang
PROFILE=inout.prf # mosflm
PROTCOUNTS=inout.dat # prolsq, protin
PROTOUT=inout.dat # prolsq, protin
PROTSCR=inout.scr # refmac
PSOUT=out.ps # anisoanl
PSRESOURCE=in.lib # anisoanl
RANTMP2=inout.scr # rantan
RANTMP3=inout.scr # rantan
#RECNIN=out.map # skewplanes
#RECNSTWIN=in.map # ?
#RECNWIN=out.map # skewplanes
#RECONIN=in.dat # skewplanes
#RECORD=inout.ind # ?
#RECORDIN=in.ind # ?
#RECORDUT=out.ind # ?
REFRCD=in.brk # lsqkab
REFSCR=inout.scr # refmac
RIBDAT=inout.dat # ribbon (not ccp4)
RIBLP=out.lp # ribbon (not ccp4)
RIBOUT=out.rib # ribbon (not ccp4)
#RMSOUT=out.out # ?
RMSTAB=out.dat # lsqkab, baverage
ROGUES=out.rgs # agrovata
ROTFUN=inout.scr # polarrfn
RSTATSBKR=out.dat # rstats
SCALES=inout.sca # rotavata
SCRADII=in.lib # sc
SCTEMP=inout.scr # sc
SCDOTS=inout.scr # sc
SCRAT1=inout.scr # protin
#SCRATCH=inout.ind # ?
SCRATCH11=inout.scr # restrain
SCRATCH12=inout.scr # restrain
SCRATCH14=inout.scr # restrain
#SCRGB1=inout.scr # sfall (no longer used)
#SD=inout.scr # ?
SEARCHSAVE=inout.sav # rsearch
#SFKHMAT=inout.dat # ?
SHIFTIN=in.dat # prolsq
SHIFTOUT=inout.out # prolsq
SHIFTS=inout.scr # sfall
#SHRINKIN=in.dat # skewplanes
#SORT1=in.ind # ?
#SORTDAT=inout.dat # skewplanes (bsort)
#SORTIN=in.ind # ?
#SORTOUT=out.ind # ?
#SPOTDUMP=inout.odd # ?
SOLIN=in.msk # dm
SOLOUT=out.msk # dm
SPOTOD=inout.od # mosflm
SPOTS=inout.spt # refix, imstills
SUMMARY=out.sum # mosflm
SYMOP=in.lib # symlib
SYMINFO=in.lib # new symlib
TABLE=inout.car # amore
#TAPEIN=in.in # ?
TEMP=inout.scr # pluto, npo
TO=inout.pea # peakmax
#TRANSFER=inout.dat # skewplanes
#TRUNCIN=in.map # skewplanes
#TRUNCWIN=in.map # skewplanes
#ULYIN=in.uly # ?
WORKCD=in.brk # lsqkab
WRKIN=in.map # maprot
WRKOUT=out.map # maprot
XYZIN=in.brk # general coordinate i/p
XYZOUT=out.brk # general coordinate o/p
JWCSCR=inout.scr # libjwc_f
#XYZREG=inout.reg # ?
#HELPFILE=in.hlb # cli_help, chlp (obsolete?)
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