/usr/include/gdna.h is in libgff-dev 1.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | #ifndef GDNA_H
#define GDNA_H
#include "GBase.h"
char ntComplement(char c);
//in-place reverse complement of a nucleotide (sub)sequence
char* reverseComplement(char* seq, int slen=0);
bool gDnaInit();
byte gdna2bit(char* &nt, int n=4); //pack n bases into a byte (n can be 1..4)
char g2bit2base(byte v2bit); //convert the 2-bit value into 'A', 'C', 'G' or 'T'
#endif
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