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/usr/lib/x86_64-linux-gnu/pkgconfig/gegl-0.3.pc is in libgegl-dev 0.3.4-1ubuntu2.

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prefix=/usr
exec_prefix=${prefix}
libdir=${prefix}/lib/x86_64-linux-gnu
includedir=${prefix}/include
pluginsdir=${prefix}/lib/x86_64-linux-gnu/gegl-0.3

Name: GEGL
Description: Generic Graphics Library 
Version: 0.3.4
Requires: gobject-2.0 gmodule-2.0 gio-2.0 json-glib-1.0 gio-unix-2.0 babl
Libs: -L${libdir} -lgegl-0.3 -lgegl-npd-0.3 -lm
Cflags: -I${includedir}/gegl-0.3