This file is indexed.

/usr/include/CLAM/Segmentation.hxx is in libclam-dev 1.4.0-7.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
#ifndef Segmentation_hxx
#define Segmentation_hxx

#include <vector>
#include <algorithm>
#include <iterator>
#include <cmath>
#include <sstream>
#include "Array.hxx"
#include "XMLAdapter.hxx"

namespace CLAM
{
	class Segmentation : public Component 
	{
	public:
		class InsertedOutOfBounds : public std::exception
		{
			public:
			const char * what() const throw () { return "Segmentation point inserted out of limits";}
		};
		typedef std::vector<double> TimePositions;
	public:
		Segmentation()
			: _current(0)
			, _maxPosition(0)
		{
		}
		Segmentation(double maxPosition)
			: _current(0)
			, _maxPosition(maxPosition)
		{
		}
		virtual ~Segmentation();
		/**
		 * Inserts a new border at timePosition.
		 */
		virtual unsigned insert(double timePosition)=0;
		/**
		 * Removes the specified segment.
		 * The previous segment is expanded to cover the region.
		 * When removing the first segment, the next segment is the one expanded to start at 0.
		 * When just a single element, no efect at all.
		 */
		virtual void remove(unsigned segment)=0;
		/**
		 * Returns the index of the segment whose offset is nearest 
		 * to the given time position, and within the tolerance.
		 * If no end of segment within the tolerance range an invalid
		 * segment is returned (nSegments)
		 */
		virtual unsigned pickOffset(double timePosition, double tolerance) const=0;
		/**
		 * Returns the index of the segment whose onset is nearest
		 * to the given time position, and within the tolerance.
		 * If no end of segment within the tolerance range an invalid
		 * segment is returned (nSegments)
		 */
		virtual unsigned pickOnset(double timePosition, double tolerance) const=0;
		/**
		 * Returns the index of the segment which body is on timePosition.
		 */
		virtual unsigned pickSegmentBody(double timePosition) const=0;
		/**
		 * Performs a dragging movement for the Onset of the given
		 * segment in order to move it to the newTimePosition.
		 * Constraints for the segmentation mode are applied.
		 */
		virtual void dragOnset(unsigned segment, double newTimePosition)=0;
		/**
		 * Performs a dragging movement for the Offset of the given
		 * segment in order to move it to the newTimePosition.
		 * Constraints for the segmentation mode are applied.
		 */
		virtual void dragOffset(unsigned segment, double newTimePosition)=0;

		virtual void fillArray(DataArray& segmentation) const =0;
		/**
		 * take data from an array.
		 */
		virtual void takeArray(const TData * begin, const TData * end) =0;

		const char * GetClassName() const { return "Segmentation"; }

		void StoreOn(Storage & storage) const
		{
			XMLAdapter<double> adapter(_maxPosition, "max", false);
			storage.Store(adapter);
			CLAM::DataArray array;
			fillArray(array);
			array.StoreOn(storage);
		}

		void LoadFrom(Storage & storage) 
		{
			double newmaxPosition;
			XMLAdapter<double> adapter(newmaxPosition, "max", false);
			if(storage.Load(adapter))
			{
				maxPosition(newmaxPosition);
			}
			else	{
				//when the maxPos is not present, set it to a large number
				maxPosition(100000);
			}
			DataArray array;
			array.LoadFrom(storage);
			const unsigned size = array.Size();
			const TData* ptr=array.GetPtr(); 
			takeArray(ptr, ptr+size);
			
		}

		void select(unsigned segment)
		{
			_selection[segment]=true;
		}
		void deselect(unsigned segment)
		{
			_selection[segment]=false;
		}
		void clearSelection()
		{
			for (unsigned i=0; i<_selection.size(); i++)
				_selection[i]=false;
		}

		/**
		 * Testing method for the unit tests.
		 */
		std::string boundsAsString() const
		{
			std::ostringstream os;
			for (unsigned i=0; i<_offsets.size(); i++)
			{
				if (_selection[i]) os << "+";
				os << "(" << _onsets[i] << "," << _offsets[i] << ") ";
			}
			return os.str();
		}

		/**
		 * Returns a vector of time position of the segment onsets.
		 */
		const TimePositions & onsets() const
		{
			return _onsets;
		}
		/**
		 * Returns a vector of time position of the segment offsets.
		 */
		const TimePositions & offsets() const
		{
			return _offsets;
		}
		/**
		 * Returns a vector of segment labels
		 */
		const std::vector<std::string> & labels() const
		{
			return _labels;
		}
		/**
		 * Sets the label for a particular segment
		 */
		void setLabel(unsigned segment, std::string label)
		{
			if (segment>=_labels.size()) return; // Invalid segment
			_labels[segment] = label;
		}
		/**
		 * Returns a vector of time position of the segment selections.
		 */
		const std::vector<bool> & selections() const
		{
			return _selection;
		}
		/**
		 * Returns the current segmentation.
		 */
		unsigned current() const
		{
			return _current;
		}
		/**
		 * Changes teh current segmentation
		 */
		void current(unsigned index)
		{
			if (index>=_onsets.size()) return;
			_current = index;
		}
		double maxPosition() const
		{
			return _maxPosition;
		}
		virtual void maxPosition(double maxPosition)
		{
			_maxPosition = maxPosition;
		}
		void xUnits(const std::string & units)
		{
			_xUnits=units;
		}
		const std::string & xUnits() const
		{
			return _xUnits;
		}
	protected:
		TimePositions _onsets;
		TimePositions _offsets;
		std::vector<std::string> _labels;
		std::vector<bool> _selection;
		unsigned _current;
		double _maxPosition;
		std::string _xUnits;
	};

}



#endif//Segmentation_hxx