/usr/include/bambamc/BamBam_SamInfo.h is in libbambamc-dev 0.0.50-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 | /**
bambamc
Copyright (C) 2009-2013 German Tischler
Copyright (C) 2011-2013 Genome Research Limited
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
**/
#if ! defined(BAMBAMC_SAMINFO_H)
#define BAMBAMC_SAMINFO_H
#include <stdint.h>
typedef enum _bambamc_sam_field_status { bambamc_sam_field_undefined = 0, bambamc_sam_field_defined = 1 } bambamc_sam_field_status;
typedef char const * BamBam_SamInfo_cptrpair[2];
typedef struct _BamBam_SamInfo
{
char * qname;
unsigned int qnamemax;
bambamc_sam_field_status qnamedefined;
unsigned int qnamelen;
int32_t flag;
bambamc_sam_field_status flagdefined;
char * rname;
unsigned int rnamemax;
bambamc_sam_field_status rnamedefined;
int32_t pos;
bambamc_sam_field_status posdefined;
int32_t mapq;
bambamc_sam_field_status mapqdefined;
char * cigar;
unsigned int cigarmax;
bambamc_sam_field_status cigardefined;
char * rnext;
unsigned int rnextmax;
bambamc_sam_field_status rnextdefined;
int32_t pnext;
bambamc_sam_field_status pnextdefined;
int32_t tlen;
bambamc_sam_field_status tlendefined;
char * seq;
unsigned int seqmax;
bambamc_sam_field_status seqdefined;
unsigned int seqlen;
char * qual;
unsigned int qualmax;
bambamc_sam_field_status qualdefined;
unsigned int quallen;
} BamBam_SamInfo;
extern BamBam_SamInfo * BamBam_SamInfo_Delete(BamBam_SamInfo * object);
extern BamBam_SamInfo * BamBam_SamInfo_New();
extern void BamBam_SamInfo_initSamCharTables();
extern int BamBam_SamInfo_parseSamLine(BamBam_SamInfo_cptrpair * fields, BamBam_SamInfo * saminfo);
#endif
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