/usr/bin/
|
|
root:root
|
0o755
|
|
/usr/bin/khmer
|
text/x-shellscript
|
root:root
|
0o755
|
569 bytes
|
/usr/share/
|
|
root:root
|
0o755
|
|
/usr/share/appdata/
|
|
root:root
|
0o755
|
|
/usr/share/appdata/khmer.metainfo.xml
|
text/xml
|
root:root
|
0o644
|
658 bytes
|
/usr/share/python3/
|
|
root:root
|
0o755
|
|
/usr/share/python3/runtime.d/
|
|
root:root
|
0o755
|
|
/usr/share/python3/runtime.d/khmer.rtupdate
|
text/x-shellscript
|
root:root
|
0o755
|
121 bytes
|
/usr/share/man/
|
|
root:root
|
0o755
|
|
/usr/share/man/man1/
|
|
root:root
|
0o755
|
|
/usr/share/man/man1/khmer.1.gz
|
application/gzip
|
root:root
|
0o644
|
756 bytes
|
/usr/share/lintian/
|
|
root:root
|
0o755
|
|
/usr/share/lintian/overrides/
|
|
root:root
|
0o755
|
|
/usr/share/lintian/overrides/khmer
|
text/plain
|
root:root
|
0o644
|
2.2 KB
|
/usr/share/doc/
|
|
root:root
|
0o755
|
|
/usr/share/doc/khmer/
|
|
root:root
|
0o755
|
|
/usr/share/doc/khmer/copyright
|
text/plain
|
root:root
|
0o644
|
4.4 KB
|
/usr/share/doc/khmer/changelog.Debian.gz
|
application/gzip
|
root:root
|
0o644
|
585 bytes
|
/usr/lib/
|
|
root:root
|
0o755
|
|
/usr/lib/python3/
|
|
root:root
|
0o755
|
|
/usr/lib/python3/dist-packages/
|
|
root:root
|
0o755
|
|
/usr/lib/python3/dist-packages/oxli/
|
|
root:root
|
0o755
|
|
/usr/lib/python3/dist-packages/oxli/functions.py
|
text/x-python
|
root:root
|
0o644
|
2.6 KB
|
/usr/lib/python3/dist-packages/oxli/__init__.py
|
text/x-python
|
root:root
|
0o644
|
2.9 KB
|
/usr/lib/python3/dist-packages/oxli/build_graph.py
|
text/plain
|
root:root
|
0o644
|
5.0 KB
|
/usr/lib/python3/dist-packages/khmer-2.0.egg-info/
|
|
root:root
|
0o755
|
|
/usr/lib/python3/dist-packages/khmer-2.0.egg-info/dependency_links.txt
|
application/octet-stream
|
root:root
|
0o644
|
1 byte
|
/usr/lib/python3/dist-packages/khmer-2.0.egg-info/requires.txt
|
text/plain
|
root:root
|
0o644
|
104 bytes
|
/usr/lib/python3/dist-packages/khmer-2.0.egg-info/top_level.txt
|
text/plain
|
root:root
|
0o644
|
11 bytes
|
/usr/lib/python3/dist-packages/khmer-2.0.egg-info/PKG-INFO
|
text/plain
|
root:root
|
0o644
|
6.1 KB
|
/usr/lib/python3/dist-packages/khmer-2.0.egg-info/not-zip-safe
|
application/octet-stream
|
root:root
|
0o644
|
1 byte
|
/usr/lib/python3/dist-packages/khmer/
|
|
root:root
|
0o755
|
|
/usr/lib/python3/dist-packages/khmer/thread_utils.py
|
text/x-c++
|
root:root
|
0o644
|
8.0 KB
|
/usr/lib/python3/dist-packages/khmer/_version.py
|
text/plain
|
root:root
|
0o644
|
415 bytes
|
/usr/lib/python3/dist-packages/khmer/_khmer.cpython-35m-x86_64-linux-gnu.so
|
application/x-sharedlib
|
root:root
|
0o644
|
576.9 KB
|
/usr/lib/python3/dist-packages/khmer/_khmer.cc
|
text/x-c
|
root:root
|
0o644
|
142.3 KB
|
/usr/lib/python3/dist-packages/khmer/__init__.py
|
text/x-python
|
root:root
|
0o644
|
14.6 KB
|
/usr/lib/python3/dist-packages/khmer/utils.py
|
text/x-c++
|
root:root
|
0o644
|
7.8 KB
|
/usr/lib/python3/dist-packages/khmer/khmer_args.py
|
text/x-c++
|
root:root
|
0o644
|
18.7 KB
|
/usr/lib/python3/dist-packages/khmer/tests/
|
|
root:root
|
0o755
|
|
/usr/lib/python3/dist-packages/khmer/tests/test_functions.py
|
text/x-python
|
root:root
|
0o644
|
11.9 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_normalize_by_median.py
|
text/x-python
|
root:root
|
0o644
|
27.4 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_hll.py
|
text/x-python
|
root:root
|
0o644
|
9.4 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_subset_graph.py
|
text/x-c++
|
root:root
|
0o644
|
22.2 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_counting_single.py
|
text/x-python
|
root:root
|
0o644
|
11.0 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_threaded_sequence_processor.py
|
text/x-python
|
root:root
|
0o644
|
7.2 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_countgraph.py
|
text/x-c++
|
root:root
|
0o644
|
37.1 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_oxli_functions.py
|
text/x-python
|
root:root
|
0o644
|
4.4 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_labelhash.py
|
text/x-python
|
root:root
|
0o644
|
14.4 KB
|
/usr/lib/python3/dist-packages/khmer/tests/__init__.py
|
text/plain
|
root:root
|
0o644
|
1.7 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_read_aligner.py
|
text/x-python
|
root:root
|
0o644
|
22.6 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_filter.py
|
text/x-c++
|
root:root
|
0o644
|
3.1 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_lump.py
|
text/x-python
|
root:root
|
0o644
|
6.6 KB
|
/usr/lib/python3/dist-packages/khmer/tests/khmer_tst_utils.py
|
text/x-python
|
root:root
|
0o644
|
6.8 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_sandbox_scripts.py
|
text/x-c++
|
root:root
|
0o644
|
11.0 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_read_parsers.py
|
text/x-python
|
root:root
|
0o644
|
12.4 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_graph.py
|
text/x-c++
|
root:root
|
0o644
|
10.8 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_nodegraph.py
|
text/x-python
|
root:root
|
0o644
|
28.7 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_scripts.py
|
text/x-python
|
root:root
|
0o644
|
116.4 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_version.py
|
text/x-python
|
root:root
|
0o644
|
2.7 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_script_arguments.py
|
text/x-python
|
root:root
|
0o644
|
10.0 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test_streaming_io.py
|
text/x-python
|
root:root
|
0o644
|
15.7 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/
|
|
root:root
|
0o755
|
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired.fa
|
text/plain
|
root:root
|
0o644
|
828 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/goodversion-k12.ht
|
application/octet-stream
|
root:root
|
0o644
|
16 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq.gz
|
application/gzip
|
root:root
|
0o644
|
2.1 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/badversion-k32.tagset
|
application/octet-stream
|
root:root
|
0o644
|
20 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/fakelump.fa
|
text/plain
|
root:root
|
0o644
|
12.0 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/badversion-k12.ht
|
application/octet-stream
|
root:root
|
0o644
|
84 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-overlap1.fa
|
text/plain
|
root:root
|
0o644
|
1.2 MB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/100-reads.fq.gz
|
application/gzip
|
root:root
|
0o644
|
6.1 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-paired.fa
|
text/plain
|
root:root
|
0o644
|
838 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.paired.fq
|
text/plain
|
root:root
|
0o644
|
1.6 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-filter-abund-Ns.fq
|
text/plain
|
root:root
|
0o644
|
1.0 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/100-reads.fq.bz2
|
application/x-bzip2
|
root:root
|
0o644
|
5.1 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-b.fa
|
text/plain
|
root:root
|
0o644
|
6.2 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-empty.fa.bz2
|
application/x-empty
|
root:root
|
0o644
|
0 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-fastq-n-reads.fq
|
text/plain
|
root:root
|
0o644
|
14.7 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-sweep-reads.fa
|
text/plain
|
root:root
|
0o644
|
420 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/real-partition-tiny.fa
|
text/plain
|
root:root
|
0o644
|
233 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/goodversion-k12.ht.gz
|
application/gzip
|
root:root
|
0o644
|
31 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/multi-output.fa
|
text/plain
|
root:root
|
0o644
|
277 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/dn-test-all-paired-all-keep.fa
|
text/plain
|
root:root
|
0o644
|
851 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/badversion-k32.stoptags
|
application/octet-stream
|
root:root
|
0o644
|
1.1 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-sweep-reads.fq
|
text/plain
|
root:root
|
0o644
|
793 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/real-partition-small.fa
|
text/plain
|
root:root
|
0o644
|
673 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-fastq-reads.fq
|
text/plain
|
root:root
|
0o644
|
14.7 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-graph2.fa
|
text/plain
|
root:root
|
0o644
|
136 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/goodversion-k32.tagset
|
application/octet-stream
|
root:root
|
0o644
|
38 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken.fq.2
|
text/plain
|
root:root
|
0o644
|
511 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-transcript.fa
|
text/plain
|
root:root
|
0o644
|
132 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired.fa.2
|
text/plain
|
root:root
|
0o644
|
414 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-X2.fa
|
text/plain
|
root:root
|
0o644
|
61.9 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.odd.fa
|
text/plain
|
root:root
|
0o644
|
3.1 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/combine_parts_1.fa
|
text/plain
|
root:root
|
0o644
|
324 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-reads.fa
|
text/plain
|
root:root
|
0o644
|
2.3 MB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-mixed-2.fq
|
text/plain
|
root:root
|
0o644
|
2.1 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa.gz
|
application/gzip
|
root:root
|
0o644
|
185 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken2.fq.1
|
text/plain
|
root:root
|
0o644
|
510 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-mixed.fa.pe
|
text/plain
|
root:root
|
0o644
|
828 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/goodversion-k32.stoptags
|
application/octet-stream
|
root:root
|
0o644
|
1.1 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-labels.fa
|
text/plain
|
root:root
|
0o644
|
485 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/filter-test-B.fa
|
text/plain
|
root:root
|
0o644
|
119 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken.fq.1
|
text/plain
|
root:root
|
0o644
|
765 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/fakelump.fa.stoptags.txt
|
text/plain
|
root:root
|
0o644
|
4.7 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-mixed.fa
|
text/plain
|
root:root
|
0o644
|
1.1 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-overlap2.fa
|
text/plain
|
root:root
|
0o644
|
1.5 MB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fq
|
text/plain
|
root:root
|
0o644
|
44.2 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq.bz2
|
application/x-bzip2
|
root:root
|
0o644
|
1.9 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-slash1.fq.1
|
text/plain
|
root:root
|
0o644
|
1.0 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/filter-test-A.fa
|
text/plain
|
root:root
|
0o644
|
36 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-short.fa
|
text/plain
|
root:root
|
0o644
|
14 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file.bz2
|
application/x-bzip2
|
root:root
|
0o644
|
14 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file.gz
|
application/gzip
|
root:root
|
0o644
|
20 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-mixed.fq.se
|
text/plain
|
root:root
|
0o644
|
593 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/empty-file
|
application/x-empty
|
root:root
|
0o644
|
0 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-3.fa
|
text/plain
|
root:root
|
0o644
|
2.0 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.even.fa
|
text/plain
|
root:root
|
0o644
|
3.1 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken4.fq.1
|
text/plain
|
root:root
|
0o644
|
263 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired.fq.2
|
text/plain
|
root:root
|
0o644
|
765 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken4.fq.2
|
text/plain
|
root:root
|
0o644
|
263 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-empty.fa
|
application/x-empty
|
root:root
|
0o644
|
0 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/single-read.fq
|
text/plain
|
root:root
|
0o644
|
106 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fq
|
text/plain
|
root:root
|
0o644
|
12.2 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa
|
text/plain
|
root:root
|
0o644
|
6.2 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/all-A.fa
|
text/plain
|
root:root
|
0o644
|
35 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-output-partitions.fa
|
text/plain
|
root:root
|
0o644
|
218 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-impaired.fa
|
text/plain
|
root:root
|
0o644
|
828 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/readaligner-k12.json
|
text/plain
|
root:root
|
0o644
|
1.2 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/casava_18-pe.fq
|
text/plain
|
root:root
|
0o644
|
998 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired_one.base.dif.fa
|
text/plain
|
root:root
|
0o644
|
277 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-reads.fq.bz2
|
application/x-bzip2
|
root:root
|
0o644
|
572.0 KB
|
/usr/lib/khmer/bin/make-initial-stoptags.py
|
text/x-python
|
root:root
|
0o755
|
6.1 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired.fq
|
text/plain
|
root:root
|
0o644
|
1.5 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken.fq.badright
|
text/plain
|
root:root
|
0o644
|
507 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken2.fq.2
|
text/plain
|
root:root
|
0o644
|
766 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken.fq.paired_bad
|
text/plain
|
root:root
|
0o644
|
1020 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-mixed.fa.se
|
text/plain
|
root:root
|
0o644
|
346 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-large.fa
|
text/plain
|
root:root
|
0o644
|
10.5 MB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken.fq.badleft
|
text/plain
|
root:root
|
0o644
|
506 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/dn-test-some-paired-all-keep.fa
|
text/plain
|
root:root
|
0o644
|
640 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/100-reads.fq.truncated.bz2
|
application/x-bzip2
|
root:root
|
0o644
|
1.5 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-mixed.fq
|
text/plain
|
root:root
|
0o644
|
2.1 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/dn-test-none-paired.fa
|
text/plain
|
root:root
|
0o644
|
426 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken3.fq.2
|
text/plain
|
root:root
|
0o644
|
511 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-error-reads.fq
|
text/plain
|
root:root
|
0o644
|
14.7 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-graph.fa
|
text/plain
|
root:root
|
0o644
|
218 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/badversion-k12.ct
|
application/octet-stream
|
root:root
|
0o644
|
47 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/biglump-random-20-a.fa
|
text/plain
|
root:root
|
0o644
|
8.1 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-reads.fq.gz
|
application/gzip
|
root:root
|
0o644
|
745.5 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/100-reads.fq.truncated.gz
|
application/gzip
|
root:root
|
0o644
|
1.3 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.paired2.fq
|
text/plain
|
root:root
|
0o644
|
1.6 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-slash1.fq.2
|
text/plain
|
root:root
|
0o644
|
1.0 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/truncated.fq
|
text/plain
|
root:root
|
0o644
|
49 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired.fa.1
|
text/plain
|
root:root
|
0o644
|
414 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-sweep-contigs.fp
|
text/plain
|
root:root
|
0o644
|
493 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.gz
|
application/gzip
|
root:root
|
0o644
|
2.0 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-31-c.fa
|
text/plain
|
root:root
|
0o644
|
74.0 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa
|
text/plain
|
root:root
|
0o644
|
23.6 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-mixed-broken.fq
|
text/plain
|
root:root
|
0o644
|
253 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/readaligner-default.json
|
text/plain
|
root:root
|
0o644
|
1.2 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-mixed.fq.pe
|
text/plain
|
root:root
|
0o644
|
1.5 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/normC20k20.ct
|
application/octet-stream
|
root:root
|
0o644
|
3.8 MB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-paired.fq
|
text/plain
|
root:root
|
0o644
|
1.5 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.part
|
text/plain
|
root:root
|
0o644
|
6.4 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/random-20-a.fa.bz2
|
application/x-bzip2
|
root:root
|
0o644
|
1.8 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read.fa
|
text/plain
|
root:root
|
0o644
|
138 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/old-style-format-w-comments.fq
|
text/plain
|
root:root
|
0o644
|
1.6 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-slash1.fq
|
text/plain
|
root:root
|
0o644
|
2.1 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-multi.fa
|
text/plain
|
root:root
|
0o644
|
264 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-graph5.fa
|
text/plain
|
root:root
|
0o644
|
267 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-abund-read-2.fa.bz2
|
application/x-bzip2
|
root:root
|
0o644
|
173 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/test-fastq-reads.fa
|
text/plain
|
root:root
|
0o644
|
8.8 KB
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired.fq.1
|
text/plain
|
root:root
|
0o644
|
765 bytes
|
/usr/lib/python3/dist-packages/khmer/tests/test-data/paired-broken3.fq.1
|
text/plain
|
root:root
|
0o644
|
765 bytes
|
/usr/lib/python3/dist-packages/khmer/kfile.py
|
text/x-python
|
root:root
|
0o644
|
8.4 KB
|
/usr/lib/python3/dist-packages/khmer/khmer_logger.py
|
text/x-python
|
root:root
|
0o644
|
2.8 KB
|
/usr/lib/khmer/
|
|
root:root
|
0o755
|
|
/usr/lib/khmer/bin/
|
|
root:root
|
0o755
|
|
/usr/lib/khmer/bin/interleave-reads.py
|
text/x-python
|
root:root
|
0o755
|
5.6 KB
|
/usr/lib/khmer/bin/partition-graph.py
|
text/x-python
|
root:root
|
0o755
|
7.2 KB
|
/usr/lib/khmer/bin/extract-paired-reads.py
|
text/x-python
|
root:root
|
0o755
|
7.4 KB
|
/usr/lib/khmer/bin/filter-abund.py
|
text/x-python
|
root:root
|
0o755
|
7.1 KB
|
/usr/lib/khmer/bin/filter-abund-single.py
|
text/x-python
|
root:root
|
0o755
|
6.1 KB
|
/usr/lib/khmer/bin/sample-reads-randomly.py
|
text/x-python
|
root:root
|
0o755
|
9.0 KB
|
/usr/lib/khmer/bin/extract-long-sequences.py
|
text/x-python
|
root:root
|
0o755
|
3.9 KB
|
/usr/lib/khmer/bin/find-knots.py
|
text/x-python
|
root:root
|
0o755
|
7.4 KB
|
/usr/lib/khmer/bin/unique-kmers.py
|
text/x-python
|
root:root
|
0o755
|
6.6 KB
|
/usr/lib/khmer/bin/count-median.py
|
text/x-python
|
root:root
|
0o755
|
5.2 KB
|
/usr/lib/khmer/bin/annotate-partitions.py
|
text/x-python
|
root:root
|
0o755
|
4.7 KB
|
/usr/lib/khmer/bin/extract-partitions.py
|
text/x-python
|
root:root
|
0o755
|
10.4 KB
|
/usr/lib/khmer/bin/normalize-by-median.py
|
text/x-python
|
root:root
|
0o755
|
15.9 KB
|
/usr/lib/khmer/bin/load-into-counting.py
|
text/x-python
|
root:root
|
0o755
|
8.2 KB
|
/usr/lib/khmer/bin/load-graph.py
|
text/x-python
|
root:root
|
0o755
|
2.4 KB
|
/usr/lib/khmer/bin/abundance-dist-single.py
|
text/x-python
|
root:root
|
0o755
|
8.4 KB
|
/usr/lib/khmer/bin/do-partition.py
|
text/x-python
|
root:root
|
0o755
|
9.2 KB
|
/usr/lib/khmer/bin/filter-stoptags.py
|
text/x-python
|
root:root
|
0o755
|
4.5 KB
|
/usr/lib/khmer/bin/split-paired-reads.py
|
text/x-python
|
root:root
|
0o755
|
8.1 KB
|
/usr/lib/khmer/bin/fastq-to-fasta.py
|
text/x-python
|
root:root
|
0o755
|
4.3 KB
|
/usr/lib/khmer/bin/abundance-dist.py
|
text/x-python
|
root:root
|
0o755
|
6.8 KB
|
/usr/lib/khmer/bin/trim-low-abund.py
|
text/x-python
|
root:root
|
0o755
|
14.1 KB
|
/usr/lib/khmer/bin/readstats.py
|
text/x-python
|
root:root
|
0o755
|
7.5 KB
|
/usr/lib/khmer/bin/merge-partitions.py
|
text/x-python
|
root:root
|
0o755
|
4.4 KB
|