This file is indexed.

/usr/bin/cmalign is in infernal 1.1.1-3.

This file is owned by root:root, with mode 0o755.

The actual contents of the file can be viewed below.

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#!/bin/sh
BINNAME=`basename $0`

if grep -q '^flags[[:space:]]*:.* sse2 ' /proc/cpuinfo ; then
    /usr/lib/infernal/$BINNAME $@
else
cat <<EOT
To run $BINNAME from infernal package your proccessor needs SSE2 which is not
available on this machine.
 ... Exiting
EOT
fi