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Title: Manual for bowtie
Author: Ben Langmead
Abstract: ultrafast memory-efficient short read aligner
Bowtie is an ultrafast, memory-efficient short read aligner geared toward
quickly aligning large sets of short DNA sequences (reads) to large genomes. It
aligns 35-base-pair reads to the human genome at a rate of 25 million reads per
hour on a typical workstation. Bowtie indexes the genome with a Burrows-Wheeler
index to keep its memory footprint small: for the human genome, the index is
typically about 2.2 GB (for unpaired alignment) or 2.9 GB (for paired-end or
colorspace alignment). Multiple processors can be used simultaneously to
achieve greater alignment speed. Bowtie can also output alignments in the
standard SAM format, allowing Bowtie to interoperate with other tools
supporting SAM, including the SAMtools consensus, SNP, and indel callers.
Section: Science/Biology
Format: html
Files: /usr/share/doc/bowtie/manual.html
Index: /usr/share/doc/bowtie/manual.html
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